| LMiller_43630.BAL | LMiller_43752.BAL | LMiller_43753.BAL | LMiller_43767.BAL | LMiller_43768.BAL | LMiller_43803.BAL | LMiller_43828.BAL | LMiller_43829.BAL | LMiller_43858.BAL | LMiller_43880.BAL | LMiller_43882.BAL | LMiller_43900.BAL | LMiller_43915.BAL | LMiller_43964.BAL | LMiller_43630.Swab | LMiller_43752.Swab | LMiller_43753.Swab | LMiller_43767.Swab | LMiller_43768.Swab | LMiller_43803.Swab | LMiller_43829.Swab | LMiller_43858.Swab | LMiller_43880.Swab | LMiller_43882.Swab | LMiller_43900.Swab | LMiller_43915.Swab | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 697c3c5367c73e389a9a034ce1d7b737 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 21 | 0 | 0 | 0 | 17 |
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| Kingdom | Phylum | Class | Order | Family | Genus | Species | |
|---|---|---|---|---|---|---|---|
| 697c3c5367c73e389a9a034ce1d7b737 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Paludibacteraceae | g__F0058 | s__uncultured_bacterium |
| a82d1e0712d504e0239634e3e5321438 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Paludibacteraceae | g__F0058 | s__uncultured_bacterium |
| f5ffd05c1e22f1cdcd3e9f384e8cb317 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Muribaculaceae | g__Muribaculum | NA |
| d60593a75368eb2dd66ecbbec3313863 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Muribaculaceae | g__Muribaculaceae | s__uncultured_Bacteroidales |
| 290a870c0b153a6f31aa38df81ae5e9d | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Porphyromonadaceae | g__Porphyromonas | NA |
| 416f578790b3f0667464e5cc97464a55 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Tannerellaceae | g__Tannerella | NA |
| 647d11bd18aab6cfb71a394ecdab0c27 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Tannerellaceae | g__Tannerella | s__Tannerella_forsythia |
| b26833da2db0de54b3c32954c30fa48b | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Tannerellaceae | g__Parabacteroides | NA |
| 69e34725046181e6cd5f33d9fb348af5 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Porphyromonadaceae | g__Porphyromonas | s__uncultured_bacterium |
| b70052f1527ee64b4d266d671f5a14c3 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Porphyromonadaceae | g__Porphyromonas | s__uncultured_bacterium |
| 401a1c628ed64d8c9241b7082e2cda0f | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Porphyromonadaceae | g__Porphyromonas | NA |
| e6254f3b5a16e0b168db873d5ca3b1ca | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotellaceae_UCG-001 | NA |
| 87f48a9d781c3b72abf3fa92f896f2f7 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| fb3bfadb9daebbae195a2fe1dfe318e6 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| 0b9121c5f4cc15f1ff7b5509946137e6 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| b7d858871c56b4130c6556ce3f29fd20 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| 77fc8c8486167edc801c5043afff5886 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| d81947531814a1fe71c12a67d3cc5c2f | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| da6a7cba87e0895b9cbe6037b9bd8b3b | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| f33bfd8864ae5b60963b8b929de87561 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| 675c847bccbc53942ebb7b8cbb4efc4d | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| 9441ebd7d976e935bd4f3f85ad6b9cd5 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__uncultured | s__uncultured_bacterium |
| c890ba30bf6a001d11929e3d668b59ad | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| 6d2fe5e4cd55c89c512f6cd275e19a0f | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| 26931bf4bb8670b19ce17f4ac2eb65d2 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | s__Prevotella_histicola |
| 712f610d95151fd7db44bd3a13e3ad15 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| 32f8fd11d2bee278d609a1d4ab767554 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | s__Prevotella_melaninogenica |
| 116b000bcdd330f4319bda48bd997abf | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| 23b8bac0a94108cbf1f74ab89aec965b | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | s__Prevotella_falsenii |
| cbef40f459197faa8de7bba6a4764a34 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | s__Prevotella_pallens |
| f0801df3310d0f06c07a96b1a2542be0 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | s__Prevotella_pallens |
| 3f12a0e59a953a1871265f6f4fa579f9 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | s__Prevotella_paludivivens |
| 84f78f5ce68484506a620a9c8d2e2acf | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | s__Prevotella_shahii |
| 49c9253965d56bb180d4f561cf8d84e8 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| 510fc7ce79e4b9d729b7c819bf9e11c0 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotella | NA |
| 4cddc40fdec49f4b0ff037423eb87508 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Bacteroidaceae | g__Bacteroides | NA |
| f32f77adf5200e164c25fc750b1316b9 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Bacteroidaceae | g__Bacteroides | NA |
| d150d6fad77ceca71da50f4a347bbdee | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Bacteroidaceae | g__Bacteroides | s__uncultured_bacterium |
| df37b62e507e32409df4885c1ad2ce14 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Bacteroidaceae | g__Bacteroides | s__Bacteroides_coprocola |
| 9ba6fd3e1c6b40ecd8c1dc35a6836c79 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Bacteroidaceae | g__Bacteroides | s__Bacteroides_coprocola |
| bd4bbed1242b5b5d6432dd913258b691 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Bacteroidaceae | g__Bacteroides | s__Bacteroides_barnesiae |
| f278701143062813b9855df7e5c03f24 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Prevotellaceae_Ga6A1_group | s__uncultured_bacterium |
| 426a58d7fde254d8ff01fac25e36ff0e | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Alloprevotella | s__uncultured_Bacteroidetes |
| d1934d7c94c720cfef10dcdda067a628 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Alloprevotella | s__uncultured_Bacteroidetes |
| 46412791f6227728741db1fac098dc23 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Alloprevotella | NA |
| 4fad8f0426e8eda5207b78b5e76cc3c4 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Alloprevotella | NA |
| 0a21726cd4952a96635576553da67787 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Alloprevotella | NA |
| 8ace2448befe36dc39fce9ad15a39983 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Alloprevotella | NA |
| 00d4ed68e73301c40a34c5f4e70aa342 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Alloprevotella | NA |
| d3bd11fd8f3cbbc4c15c2aec85761131 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Alloprevotella | NA |
| baa3ee92750f65a79400a3496948666f | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Prevotellaceae | g__Alloprevotella | NA |
| 83e4a73079b72096bd9977dd7432d6c6 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Porphyromonadaceae | g__Porphyromonas | NA |
| e63ffa8bebe9df680f70be3bef91764a | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Porphyromonadaceae | g__Porphyromonas | NA |
| b72f553aef14f8ef9f2765e42c6b2d7a | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Porphyromonadaceae | g__Porphyromonas | NA |
| 8e6a7b11fe615c61f76969d70ec45683 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Porphyromonadaceae | g__Porphyromonas | NA |
| 224102d609b83a172b11bd9115107f16 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Porphyromonadaceae | g__Porphyromonas | NA |
| f2962123bb8adaeb1b746ef8a4f7f836 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Porphyromonadaceae | g__Porphyromonas | NA |
| 53574d96bc87bc4627cabdfd91d76f6b | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Porphyromonadaceae | g__Porphyromonas | NA |
| 899befdfdfdd08fe72df5def771a14b3 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Porphyromonadaceae | g__Porphyromonas | NA |
| 456161d143404951deb16068641baa6a | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Porphyromonadaceae | g__Porphyromonas | NA |
| f7abb471a96bfa8f310a879a94b3c40c | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Sphingobacteriales | f__Sphingobacteriaceae | g__Sphingobacterium | s__Sphingobacterium_spiritivorum |
| 6539cdf264635d79b1ab259dd5b3b4f0 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Sphingobacteriales | f__Sphingobacteriaceae | g__Pedobacter | NA |
| 0e4b96294f2a2985a5d7fd8c87f7ce6d | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Sphingobacteriales | f__Sphingobacteriaceae | g__Pedobacter | NA |
| 3fcc25b2980ff3e947b58c198106dd41 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Sphingobacteriales | f__Sphingobacteriaceae | g__Pedobacter | NA |
| 1a794428f534b81a86ddc63868ee5c79 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Chitinophagales | f__Chitinophagaceae | g__Aurantisolimonas | s__metagenome |
| 8d781fd45124d1e47ca5d12f6d6d4867 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Chitinophagales | f__Chitinophagaceae | g__Filobacterium | s__uncultured_bacterium |
| 7da9ea0ec3649a2fbfa3741ba3fa5f9d | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Chitinophagales | f__Chitinophagaceae | g__Filobacterium | s__uncultured_bacterium |
| f93c45431d741ea9c35fbce351cf9514 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Weeksellaceae | g__Chishuiella | s__Chishuiella_changwenlii |
| 1b98b00b0fc819488d76aa0c09d57bcc | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Weeksellaceae | g__Elizabethkingia | NA |
| 09f9294499192d4eecf29e85501cc425 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Weeksellaceae | g__Bergeyella | s__uncultured_bacterium |
| 86fc22982da07ab2a62935194f7c6f7d | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Weeksellaceae | g__Bergeyella | NA |
| 5f78c6469abc75369906f18cf0642d99 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Weeksellaceae | g__Bergeyella | NA |
| fc8675312fba62140c723a9429998935 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Weeksellaceae | g__Bergeyella | NA |
| 53f35fbed6b19a16f807663858c1fa87 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Weeksellaceae | g__Bergeyella | NA |
| d48197bd92b8c6a3f172ac4dd30d91eb | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Weeksellaceae | g__Bergeyella | NA |
| 164888579b3fc5fa594b1a3f92f6be9e | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Weeksellaceae | g__Bergeyella | NA |
| e63dfdbc2865ef713259926ddf0177d2 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Weeksellaceae | g__Bergeyella | NA |
| 65b2fb4442cdc2200be457cce105df9d | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Weeksellaceae | g__Bergeyella | NA |
| 8b33fbebe288284c0dbd87b16f900e55 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Weeksellaceae | g__Bergeyella | s__uncultured_Bergeyella |
| eabdd9c6aafdfef7838ebf30c547c9d1 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Flavobacterium | NA |
| e104c243ea51ee7b69c455fabfd7dad7 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Flavobacterium | s__Flavobacterium_ceti |
| 1bdad0b4f050c7cbdd63f50b2e03fba7 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Flavobacterium | s__Flavobacterium_ceti |
| 16b5557da675aa2b9f51caa7bf36581c | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | s__Capnocytophaga_granulosa |
| abb93be57b1955eb8b72b962a1718ec9 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | s__Capnocytophaga_granulosa |
| 2a13ffc871287f78ec30a99e4b411039 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | s__Capnocytophaga_granulosa |
| daf2e8915db65fd0667cfb7ac598f6c5 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | NA |
| a64d7739eca07ac196f81d593895fb85 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | NA |
| d04164791bd6b9ffcdf5b33ee129c6b5 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | NA |
| 0436cf47bb12fc3027d94c39ae4d828a | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | NA |
| f5e56e5421fe77fa207c8c6c4c16a4fb | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | NA |
| 099b8896f5c84538317d75c69d8422e5 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | NA |
| 2923feeb11dc42c2f0cb11cdbb8755c9 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | s__uncultured_bacterium |
| 4b1ac280cc66f5e47268dc0d33312255 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | NA |
| 74c209388c56ee5a93fa225d6f973396 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | NA |
| ad438df65d7ef791daf65c44cb24044a | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | NA |
| dd7c265161dab3b6c1a7b745a32e4d31 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | NA |
| 75ed11f48189490dbb158e1e7e27b167 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | NA |
| 160db545d9379a772525027e489d8ef2 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | NA |
| 36c80daae98d2dc716916ade3e852047 | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Flavobacteriales | f__Flavobacteriaceae | g__Capnocytophaga | NA |
| 3093cc8f14899ad0a903ad74583c1bed | k__Bacteria | p__Bacteroidota | c__Bacteroidia | o__Bacteroidales | f__Rikenellaceae | g__Alistipes | NA |
| 98aa7bb57619ef31b3aab7b8282b3451 | k__Bacteria | p__Patescibacteria | c__Gracilibacteria | o_Absconditabacteriales(SR1) | f_Absconditabacteriales(SR1) | g_Absconditabacteriales(SR1) | s__SR1_bacterium |
| 2761fe77546517a10b961f626feca59d | k__Bacteria | p__Patescibacteria | c__Gracilibacteria | o_Absconditabacteriales(SR1) | f_Absconditabacteriales(SR1) | g_Absconditabacteriales(SR1) | s__SR1_bacterium |
| 6e3e062d65c1b047950a2492118eb70b | k__Bacteria | p__Patescibacteria | c__Gracilibacteria | o_Absconditabacteriales(SR1) | f_Absconditabacteriales(SR1) | g_Absconditabacteriales(SR1) | s__SR1_bacterium |
| aebd127d4e002a91e72bae5f02ee1463 | k__Bacteria | p__Deinococcota | c__Deinococci | o__Deinococcales | f__Deinococcaceae | g__Deinococcus | NA |
| 64ad135aaec0335a493399455ed5dd14 | k__Bacteria | p__Patescibacteria | c__Saccharimonadia | o__Saccharimonadales | f__Saccharimonadales | g__Saccharimonadales | s__TM7_phylum |
| 0bb321a78fb1ebda6f414b285bc9ff42 | k__Bacteria | p__Patescibacteria | c__Gracilibacteria | o__JGI_0000069-P22 | f__JGI_0000069-P22 | g__JGI_0000069-P22 | NA |
| b0039e7430d2b8d443e507933f3075d7 | k__Bacteria | p__Patescibacteria | c__Gracilibacteria | o__JGI_0000069-P22 | f__JGI_0000069-P22 | g__JGI_0000069-P22 | NA |
| 384f663844f0b134b3d4b8aed83dfac0 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Mycoplasmatales | f__Mycoplasmataceae | g__Mycoplasma | NA |
| 46994e329da4f3393a8495036589323a | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| fa531a9e5007f7d080e555401270d85a | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 55556a9e46695b3de727d17be82bf4d9 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 24e4a3997e50367598b3152939b4fb75 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| ab65dc9c8cb103472dad8df3ad2206a1 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 8e8a8f851ead3233a07f8cda15142885 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 7a2968d1b152960ec255d04de612f814 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 714a83fc11043748846e425804b7603c | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| fbb87e6cb86026e699477563fd6291aa | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| ad027c2e39f567f099ca4fe43e6bcd80 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 891ec38db10d8b723d730ef81aa400cb | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 9e27a916ef961771585cc4ef459ca828 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| adf49f9046706086b08d4e1eda46525c | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| c03cfb7503bfe54dba9844581c0da167 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 1c5ca49e54e39bfb1568413868a6641b | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 72827c994953a87988555b1752c3d2fe | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 8472a38a835527bbe16679f89f9e0bc8 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 37125fc6b7326af0e29ddb765d441528 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | s__Fusobacterium_mortiferum |
| 6c8eb978a6a72481eb1f4bfdfdc51a30 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 7beb3425166d777b19384223e61aa36a | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| c885cae6737b13185173764ee4fde3cd | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 3df21e281098635b028cc08fb4c77017 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 7c2e801ea02e95945967ebb60d9e0637 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 12941632fca9469f01b42e089244fb8d | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 17640594df4cfd68370b089d48efafab | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| eec3c3e16ed3a0e51fe28353ed4f31e4 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| c22748d04da2d352854a7b6da3bc4f34 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| eaec3537b269faaf09eedbfd87549aad | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| f4e78e2e397dc8bd3ca2f87c245a8773 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| b39a10230a9863e6b8d1e6d9504f1c4a | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| e2cf3eec6b1c75ee81133be07a767e65 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 8cb7a412b46a1563748668bbdccbed58 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 4a9b8bd29a743ada239277431b6b9cc0 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 2a1a15bcb8089042a9bd96f11747c526 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 12274abadf66a2ac2a2647bbb9bc6f43 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 19110865bea32f92d7e104089a2e9bf7 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| a98d48f8af741cfcb131c0cd46be9bab | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| e6d24e918a1de879ec63c45791adbdf2 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| a97f91b77ce7550a71df88ab38ddc5fd | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 8674dcf0cfe35939037fa9a5b986866f | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| 76f41a937195b523b4afa4cdfd68d994 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| bd17082ec008bea514740bddd3a285d6 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Fusobacteriaceae | g__Fusobacterium | NA |
| f7a9db5541f5b7ace4474c73743c0481 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__uncultured_bacterium |
| c15ba7772639f42c56f35e97e5e8d48a | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__Leptotrichia_goodfellowii |
| 5f5a0dbcf08566abdec210b40919e80a | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__Leptotrichia_goodfellowii |
| 1cb66d96ee53ad0464a7cf199f48a1a3 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__uncultured_bacterium |
| 58bd2caa4af7ca54235a416d7ae32c8e | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__uncultured_bacterium |
| 47aa48ec8ec154954dd2d49434737268 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__uncultured_bacterium |
| 55cc2b7edaba30b1e9c7450b82f0cb2b | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__uncultured_bacterium |
| 5c5b789d178e6f22d65adaeb35a995fc | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__uncultured_bacterium |
| a6fc343dd640208ff0816cdabec0426c | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__uncultured_bacterium |
| eb7bbc66c14e2e7e264e734b0f0c01b3 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| 822042c1e061b6de469404b6cac56aa9 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__uncultured_bacterium |
| 56bec34febe4f9b1d5f58b4abe054b90 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| 3eac8b038216422f95f2431ce4b2cf4e | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__Leptotrichia_wadei |
| 6e1ee71cbf408dd92106150b93a0bfe1 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| 06693622f18b0d17a3a760c463f71e05 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| c481f7cddfafbe8f143fea53336bea23 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| 52cdd4c3305b200497e8f8061fecb13c | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| efe7cc345dac4c2359dcfda96d96376d | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| e1338f53b51df73c057dd911212902fe | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| 3918f2dc36192512a91b0ee0953b9387 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| 4d4571162fbae9d6ce602994a5dd2a9a | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| 0cf6f47d179f04197b3594b915bb3b73 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__Leptotrichia_hofstadii |
| 26d3b95fe6bb4427f481226f783047a4 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| ad6bc73d0dfe1b0bc3b7ca77e6f0a8dc | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| 46b8f9281865478261657da375e28424 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| a375ce81db65e848c1f762344851193f | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__Leptotrichia_hongkongensis |
| 6b15cd3552e3f49e35f1d88fc3fc76eb | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__Leptotrichia_trevisanii |
| b4d3722f3030aea9885a8a6fa72bdf01 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| a556ae43f7add6af6faadb29fbbf1834 | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | NA |
| b0318249edbcc891c3774b7299ac3afd | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Leptotrichia | s__metagenome |
| 95f1b19195f23a58a9ecc445253a8a1c | k__Bacteria | p__Fusobacteriota | c__Fusobacteriia | o__Fusobacteriales | f__Leptotrichiaceae | g__Streptobacillus | s__uncultured_bacterium |
| d8cd6708752160e97ea91073d838a7a3 | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Micrococcales | f__Cellulomonadaceae | g__Tropheryma | s__uncultured_Tropheryma |
| 113e6b62ab32f8b56572e4c4b9ab7a51 | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Micrococcales | f__Cellulomonadaceae | g__Tropheryma | s__uncultured_Tropheryma |
| d39a41028decdb96137579f346520e9d | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Micrococcales | f__Cellulomonadaceae | g__Tropheryma | s__uncultured_Tropheryma |
| 77385b25f24d23e87b64319c3bdc63ce | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Micrococcales | f__Cellulomonadaceae | g__Tropheryma | s__uncultured_Tropheryma |
| 128e171e4b500bd005076b40f2baf55e | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Micrococcales | f__Cellulomonadaceae | g__Tropheryma | s__uncultured_Tropheryma |
| a9b24370bdb02a8ee91855de7b8b2813 | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Bifidobacteriales | f__Bifidobacteriaceae | g__Bifidobacterium | NA |
| 9463140c5447404906615edb03bca4c8 | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Bifidobacteriales | f__Bifidobacteriaceae | g__Alloscardovia | NA |
| 68b2f49cdf7c259310aad8a3d5a88521 | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Bifidobacteriales | f__Bifidobacteriaceae | g__Alloscardovia | NA |
| d83f60183d81253a505beaeef3cd168f | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Micrococcales | f__Micrococcaceae | g__Rothia | NA |
| 0987e0bb2312b68231749472c20fc3e8 | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Actinomycetales | f__Actinomycetaceae | g__Arcanobacterium | NA |
| c6a2f591dadc98f64cee63b02fdbd7a6 | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Micrococcales | f__Micrococcaceae | g__Rothia | NA |
| 1902045fa7900495d421b8a8f308eb85 | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Micrococcales | f__Micrococcaceae | g__Rothia | NA |
| 2721fd42d5373667f111c60faaf21eac | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Micrococcales | f__Micrococcaceae | g__Rothia | NA |
| 24cc3e5ed7ac688aa9ba397a1c975eef | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Micrococcales | f__Micrococcaceae | g__Rothia | NA |
| 3cd9ce63f826137d18ca1a11155a21ad | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Micrococcales | f__Microbacteriaceae | g__Leifsonia | NA |
| 497a26126c9e726c768bdec79e8c4e9b | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Micrococcales | f__Microbacteriaceae | g__Curtobacterium | NA |
| 4f2e0db8ab996cf7529fe9d41f8cce7a | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Corynebacteriales | f__Corynebacteriaceae | g__Lawsonella | NA |
| 820f6693f569e339f183638cd73a7fe6 | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Corynebacteriales | f__Corynebacteriaceae | g__Lawsonella | NA |
| 77a920bd965da12d31f93c1adf2c5ea1 | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Corynebacteriales | f__Corynebacteriaceae | g__Corynebacterium | s__Corynebacterium_matruchotii |
| 455219eeb206cd432bf64f51159e0b4c | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Corynebacteriales | f__Corynebacteriaceae | g__Corynebacterium | s__Corynebacterium_durum |
| aa9b3a1418d146c262ec63305292065a | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Corynebacteriales | f__Corynebacteriaceae | g__Corynebacterium | NA |
| 7d78ed99b08bd1723065fdd795d17e9c | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Corynebacteriales | f__Corynebacteriaceae | g__Corynebacterium | NA |
| df8456a1abbfb4c8a2c450b44378d4cb | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Actinomycetales | f__Actinomycetaceae | g__Actinomyces | NA |
| 0ed3a6836e138f14044f6950ad7280d2 | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Actinomycetales | f__Actinomycetaceae | g__Actinomyces | NA |
| 75a3e20e916ee5ec7dceae34a1bc0209 | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Actinomycetales | f__Actinomycetaceae | g__Actinomyces | NA |
| 86a086d2aedaf97453458f07c10e29ad | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Actinomycetales | f__Actinomycetaceae | g__Actinomycetaceae | s__Actinomycetaceae_bacterium |
| 971e23d78c4b1b44672665973cff6327 | k__Bacteria | p__Actinobacteriota | c__Actinobacteria | o__Actinomycetales | f__Actinomycetaceae | g__Varibaculum | NA |
| 6128c061f0201a07dcabe9199a0ba49e | k__Bacteria | p__Spirochaetota | c__Spirochaetia | o__Spirochaetales | f__Spirochaetaceae | g__Treponema | s__Treponema_berlinense |
| 3f6e11d7ef2402e8727aa06d29ce24c1 | k__Bacteria | p__Spirochaetota | c__Spirochaetia | o__Spirochaetales | f__Spirochaetaceae | g__Treponema | NA |
| 95bad341693ce7adba4d4fe762e8f5b2 | k__Bacteria | p__Spirochaetota | c__Spirochaetia | o__Spirochaetales | f__Spirochaetaceae | g__Treponema | s__Treponema_maltophilum |
| 4ab6728d229767ccc5829b0a3b8f139f | k__Bacteria | p__Spirochaetota | c__Spirochaetia | o__Spirochaetales | f__Spirochaetaceae | g__Treponema | NA |
| 92492a89b08d1e29404c35ba08f01f68 | k__Bacteria | p__Spirochaetota | c__Spirochaetia | o__Spirochaetales | f__Spirochaetaceae | g__Treponema | NA |
| d0927320ada446780d3e125cc548c9ac | k__Bacteria | p__Spirochaetota | c__Spirochaetia | o__Spirochaetales | f__Spirochaetaceae | g__Treponema | s__unidentified |
| 0669483488e6bc7cc96908ebdfe1f160 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptostreptococcales-Tissierellales | f__Peptostreptococcales-Tissierellales | g__Parvimonas | NA |
| e93b313352019b8113e7fc66bf757917 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptostreptococcales-Tissierellales | f__Peptostreptococcales-Tissierellales | g__Parvimonas | NA |
| 08ea1d1191e634047bd4f5d67c3e8b03 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptostreptococcales-Tissierellales | f__Peptostreptococcales-Tissierellales | g__Parvimonas | NA |
| 40aec1a954f00728a41adf465bfd8ae1 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptostreptococcales-Tissierellales | f__Peptostreptococcales-Tissierellales | g__Parvimonas | NA |
| a4eac9fcad4c5f9555c01a06d10b6fc6 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptococcales | f__Peptococcaceae | g__Peptococcus | NA |
| e4fcc34b87d3eece6bf92cde47b63d84 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptococcales | f__Peptococcaceae | g__Peptococcus | s__Peptococcus_simiae |
| b39c18497ac6662fe9314617a0618b1c | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptococcales | f__Peptococcaceae | g__Peptococcus | s__Peptococcus_simiae |
| 11ea0be31796e3697c0a200809d226c9 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptococcales | f__Peptococcaceae | g__Peptococcus | s__Peptococcus_simiae |
| 3eb129ba3c12a44620647798dde41194 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Clostridia_UCG-014 | f__Clostridia_UCG-014 | g__Clostridia_UCG-014 | s__Clostridiales_bacterium |
| f22ee0a5903daca754fb643cd345024e | k__Bacteria | p__Firmicutes | c__Clostridia | o__Clostridia_UCG-014 | f__Clostridia_UCG-014 | g__Clostridia_UCG-014 | NA |
| aefdd711d0f4fb8b0853c92d4aebcddd | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Ruminococcaceae | g__Ruminococcus | NA |
| 0717bc0df2712284d767eb9b61bcba12 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Ruminococcaceae | g__Ruminococcus | NA |
| b4d8163d0c946cd46dbd0503a132828b | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Ruminococcaceae | g__Paludicola | NA |
| 0d7495cda74fc025bac3da9a05aa1160 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Ruminococcaceae | g__Subdoligranulum | NA |
| 4a20a5244ec9c4dfa60b32a5cb53f0e9 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Ruminococcaceae | g__Faecalibacterium | NA |
| 28bc0918b96a35946dbce4765671f220 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Ruminococcaceae | g__Faecalibacterium | NA |
| 59777186ad2e0947e97615b5d6225136 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Ruminococcaceae | g__Faecalibacterium | NA |
| f5f5e0da89730462abaf6301a9557193 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Ruminococcaceae | g__Faecalibacterium | NA |
| 3f3053fe60809d04ee141e8ad986eea1 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Ruminococcaceae | g__Fournierella | NA |
| f0e507b4232d78baef7da47adb64cd0f | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Butyricicoccaceae | g__UCG-008 | s__uncultured_bacterium |
| 14fcc0fe267b554476817be95f34c8fc | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Butyricicoccaceae | g__UCG-008 | s__uncultured_bacterium |
| 3e1088a9b0a946fd0ce8e3621fb33e85 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Oscillospiraceae | g__NK4A214_group | NA |
| 68d79c3035521e82b504b081a197d2ed | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Oscillospiraceae | g__UCG-002 | NA |
| aae4c4ed528ae16ec417df816699cfdb | k__Bacteria | p__Firmicutes | c__Clostridia | o__Oscillospirales | f__Oscillospiraceae | g__UCG-005 | NA |
| 65564efafb80060ef155c05105b8ed0b | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Defluviitaleaceae | g__Defluviitaleaceae_UCG-011 | NA |
| 34c655d69d8d97a4cb465b7ca9b6e4f4 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Anaerosporobacter | s__Caecibacterium_sporoformans |
| 1a2ccf46173284f8faddf904d183a8f0 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Anaerosporobacter | s__Caecibacterium_sporoformans |
| c252f2a8b75b40252a6c7b0f3738407b | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Anaerosporobacter | s__Caecibacterium_sporoformans |
| 427549812f9051f8f372ff62ea807e78 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Anaerosporobacter | s__Caecibacterium_sporoformans |
| 6794caffaf6122c413a2996c8c76f92d | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Anaerosporobacter | s__Caecibacterium_sporoformans |
| 6b81b752be929fe8116057f314c04ebb | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Anaerosporobacter | s__Caecibacterium_sporoformans |
| df63dbbefa3fb2d76c7807e5600fa3a9 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Anaerosporobacter | s__Caecibacterium_sporoformans |
| 1130a5c382e6a46fb3da317221512084 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Anaerosporobacter | s__Caecibacterium_sporoformans |
| 2e4f2b53b856c4def6d021d01f5abb70 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Dorea | NA |
| d71feb1923fa288790187009e8efa6d3 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Blautia | NA |
| 00a96fbd0ac34bfd245f9c24f8737f7d | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Blautia | NA |
| 9977686c30343be88979f8874db4f5ee | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Blautia | NA |
| c6c3ab4e828fb40d6e05967b7aac9338 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Blautia | NA |
| f73bc660ad02cf25a2e30bead37e34fd | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Blautia | NA |
| db7f42d2a4ded289e177bb4c00edff61 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Lachnospiraceae_NK4A136_group | NA |
| 2df371c65a7a3622b70415bd07c4081f | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Oribacterium | NA |
| 46251d23749949f510561ffb46810e72 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Oribacterium | s__uncultured_bacterium |
| 8b53c1e7c9d8c5c7f2478c690c456448 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Oribacterium | NA |
| a97ff4c1f17e5aeb43ae254f3eeaadc5 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Johnsonella | s__uncultured_bacterium |
| 111451892edcf1bab8a7eef279a48829 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Johnsonella | s__uncultured_bacterium |
| c05a9b572f318b0d5bed54862e21f4b5 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Lachnoanaerobaculum | s__uncultured_Lachnospiraceae |
| 5715f067a454fd140c037672cdd136d4 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Johnsonella | s__uncultured_bacterium |
| d4c3fc22b3695b304dba9cb14e40871c | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Johnsonella | s__Johnsonella_ignava |
| 0facdd17bfc08b45b9e17f53466cf6d5 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Johnsonella | s__Firmicutes_oral |
| 61eb84d2c1b237d12e5820d0e8491d16 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Johnsonella | s__Firmicutes_oral |
| 893ab04b63ad54ae6f437b9eb337b34a | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Roseburia | NA |
| bd5ef8f372e09bcf6ec35825be4f053c | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__Coprococcus | NA |
| aac0099991c8518a5268b1a19a84550b | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__[Eubacterium]_hallii_group | NA |
| 43de2d22c3f82423071816f91be76df7 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Lachnospirales | f__Lachnospiraceae | g__[Eubacterium]_hallii_group | NA |
| 2c73db9e85fe1ace4b0ed52547c25f7d | k__Bacteria | p__Firmicutes | c__Clostridia | o__Clostridiales | f__Clostridiaceae | g__Clostridium_sensu_stricto_1 | NA |
| 9580aa8a52ec18a4e92e701cdb595faa | k__Bacteria | p__Firmicutes | c__Clostridia | o__Clostridiales | f__Clostridiaceae | g__Clostridium_sensu_stricto_1 | NA |
| bde6c86785d8adde4cd2c63c92fad3b1 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Clostridiales | f__Clostridiaceae | g__Candidatus_Arthromitus | NA |
| 03dc314a20a7b2ee0d90d01ffd242275 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Clostridiales | f__Clostridiaceae | g__Candidatus_Arthromitus | NA |
| e994ae5567f24a896b477a67916f82a7 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptostreptococcales-Tissierellales | f__Peptostreptococcaceae | g__Filifactor | NA |
| 98bcf713cdab713b589f72f2ebcef570 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptostreptococcales-Tissierellales | f__Peptostreptococcaceae | g__Filifactor | NA |
| e335f74033bc634af43ee6baa84fa247 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptostreptococcales-Tissierellales | f__Peptostreptococcaceae | g__Romboutsia | NA |
| cc977711b62615f81f353a181ad959e1 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptostreptococcales-Tissierellales | f__Peptostreptococcaceae | g__Intestinibacter | NA |
| b25a309208292a220a84e34a9c8e9f70 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptostreptococcales-Tissierellales | f__Anaerovoracaceae | g__[Eubacterium]_brachy_group | NA |
| 5e6462a5cd16be9501cf2b4effe78a3d | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptostreptococcales-Tissierellales | f__Anaerovoracaceae | g__[Eubacterium]_nodatum_group | NA |
| 742523a3a3ffee1ce7b6b8c568053736 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptostreptococcales-Tissierellales | f__Peptostreptococcaceae | g__[Eubacterium]_yurii_group | NA |
| bc8f4b20da6a7efbc4cb6ede37704096 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptostreptococcales-Tissierellales | f__Peptostreptococcaceae | g__[Eubacterium]_yurii_group | NA |
| 7fb08fa9b7b2eef6a3db57d0de769227 | k__Bacteria | p__Firmicutes | c__Clostridia | o__Peptostreptococcales-Tissierellales | f__Peptostreptococcales-Tissierellales | g__Peptoniphilus | NA |
| 840d392f141c9aacf0a0728d9a8001be | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Selenomonadaceae | g__Selenomonas | NA |
| c7c3a99e738a8eb43e029959f2a9def9 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Selenomonadaceae | g__Selenomonas | NA |
| cb69064af2354add642bb1a01ed3cab4 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Selenomonadaceae | g__Selenomonas | NA |
| dcb780205dff9735d08f1a23c93470cf | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Selenomonadaceae | g__Selenomonas | s__Selenomonas_sputigena |
| 3756682a80bcc83817cb1b5c5366d144 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Selenomonadaceae | g__Selenomonas | NA |
| 94a302cc7a648f23c27353f085b24e06 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Selenomonadaceae | g__Anaerovibrio | NA |
| 4389ca84941288b4c15ae6c6b8cb5313 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| 843c1e156a6272162022b488a158df60 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| 531712f52227b63c1021521ebd29c475 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| 8e9f26df4f3f78c0492321dc7c6216ec | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| ea358b1ebdd7b754b4537189f97c220a | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| 76a2a89fb35336e7b117fc44ff915092 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| cd9401a6bce4a63af516d06d2a843f9d | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| 68aed095c691f3c043b9f6fc89890a2d | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| 9688f626baffe31c883bafae597fbdae | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Dialister | NA |
| be22632d5e3f6175707a3213d7a90ad2 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Dialister | NA |
| dbc4e481aa19da376e92bbe4d8ff42d3 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Dialister | s__uncultured_bacterium |
| 37fd93193e4e5ef521ca38dadafa3a5a | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| a6797af6081420fae8c781cfde495897 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| e793490ff3ebd72c4457a0e1f427eb5c | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| 923f521b9cf313f1f95c9367e09bbc1c | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| eae880eaa9c99650e399d9b4eb5dd3b0 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| 0f08a8ba9e95c5cfed91d475028e2855 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| b022b5312f30be684bdd2cc66030dea5 | k__Bacteria | p__Firmicutes | c__Negativicutes | o__Veillonellales-Selenomonadales | f__Veillonellaceae | g__Veillonella | NA |
| b6254c4d9f9e5f89f3060f6805754c17 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Erysipelotrichales | f__uncultured | g__uncultured | s__uncultured_bacterium |
| e4916954a7b156cbb911bb3c0af10d53 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Erysipelotrichales | f__uncultured | g__uncultured | s__uncultured_bacterium |
| a0871318729fc2d9f6ae1be8b45fa952 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Erysipelotrichales | f__Erysipelatoclostridiaceae | g__Erysipelatoclostridium | NA |
| ee864e547658d4889c993de87b1a349a | k__Bacteria | p__Firmicutes | c__Bacilli | o__Erysipelotrichales | f__Erysipelatoclostridiaceae | g__Erysipelotrichaceae_UCG-003 | NA |
| aafb6ca6537c21f170ece1de474769ab | k__Bacteria | p__Firmicutes | c__Bacilli | o__Staphylococcales | f__Staphylococcaceae | g__Staphylococcus | NA |
| 65d43491988bfe557da4d86a5ba25dae | k__Bacteria | p__Firmicutes | c__Bacilli | o__Staphylococcales | f__Staphylococcaceae | g__Staphylococcus | NA |
| f849febf52b4ae538554b6e65d7fc47c | k__Bacteria | p__Firmicutes | c__Bacilli | o__Staphylococcales | f__Staphylococcaceae | g__Staphylococcus | NA |
| 8339a12705dd373194b95ba731c47af8 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Staphylococcales | f__Staphylococcaceae | g__Staphylococcus | NA |
| 126e0259d6df65a50a9d14149a30f477 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Staphylococcales | f__Staphylococcaceae | g__Staphylococcus | NA |
| 9e1b1776cd5973bca311645149a85b87 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Staphylococcales | f__Staphylococcaceae | g__Staphylococcus | NA |
| 5b30ecd29701a77b385770d15cab1704 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Staphylococcales | f__Gemellaceae | g__Gemella | NA |
| c52d6c2088db628632b7a14c0e5d752d | k__Bacteria | p__Firmicutes | c__Bacilli | o__Staphylococcales | f__Gemellaceae | g__Gemella | NA |
| d23346fdcf9ebe8e57dbd511acaee05d | k__Bacteria | p__Firmicutes | c__Bacilli | o__Staphylococcales | f__Gemellaceae | g__Gemella | NA |
| 26633175b4d2a2f5feb6ebb9b87321f3 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Staphylococcales | f__Gemellaceae | g__Gemella | NA |
| 85c44c83eddc5d3028261a1000b7d0e1 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Staphylococcales | f__Gemellaceae | g__Gemella | NA |
| 29fbc7e5021229480248fa7466a499a2 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Aerococcaceae | g__Abiotrophia | s__uncultured_bacterium |
| 9908fffab7ed4f3bec44cda2f5084d49 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Enterococcaceae | g__Enterococcus | NA |
| 8e53132374397c334ee9f914a57b3edd | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Vagococcaceae | g__Vagococcus | NA |
| 2bd9309f2f97cae51d18d06ea1ca519a | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Carnobacteriaceae | g__Granulicatella | NA |
| 05bd1d289c2bccf4501b2f90976e531b | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Enterococcaceae | g__Enterococcus | NA |
| 50fd1c9614c2cdbad76a0cee521fb46b | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Catellicoccaceae | g__Catellicoccus | NA |
| 65641452be75528754b5ae258ba661c1 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Aerococcaceae | g__Aerococcus | NA |
| b03d2e5ac94c7a0d115e5c542e9315e8 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Carnobacteriaceae | g__Dolosigranulum | NA |
| 45d4fe3f6c01f77c2dfc11dd91d3359a | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Lactobacillaceae | g__Lactobacillus | NA |
| 95fdd816723ca482a5caba10bea171c8 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Lactobacillaceae | g__Lactobacillus | NA |
| d6a526b572996ed919a3e009473bc860 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Lactobacillaceae | g__Lactobacillus | NA |
| 0df6c802966e8670279671824da4f10a | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Lactobacillaceae | g__Lactobacillus | NA |
| 5d1665b0e47078aaf2b5fe621d09976d | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Lactobacillaceae | g__Lactobacillus | NA |
| 9e75d15ba3717ca20d8aa45e3c4a6bab | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Leuconostocaceae | g__Leuconostoc | NA |
| d114fb4c335125128be28401522dd41a | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Lactococcus | NA |
| e7cfd084265c4df4856ca07b1c9b24ee | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | s__Streptococcus_mutans |
| d58e3747278152d2506e3587184efd10 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 492d3ad15aeb63c93e1c94ed7853f5af | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| edc9e5c16e40aff1eadce6597940f08f | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| a966196c8aff0e8664f261016da82614 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 027cc4e57f832f6792df8fc21ffd9bbb | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 4ba7a78de011ba7897f307038d1e1bab | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 1b51357852b0b814b4d9918c6f0ab762 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 39414efe8e809129734b7c33d06c42b7 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 860d345a8b6afb765a0e588654f08c1d | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 9fec7bdd6bd88e710bd69b15692e54a0 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 06f825b512d903b9230e1a55d87359ee | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 41c50945f46692bc4a1552bfcb20f397 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 197157305cb21721cdc0e4aadc9460e2 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| aa231e014d821dc7845da2972df0a230 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| b4fd80c189d9f173e66fcea1caf8111e | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| b2001ab4daf61a63d9d2f980bdf2c3dd | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 108bd50f45057fda4dd3f24f9fae46fa | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 2cc07609ab15894baed9fe4c508dd12d | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 55b7b7586b6252b87981f170d6ac11c5 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 94b8f960aa3adb2f6f23adf0c26e6058 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 5179a2d863129db0480a654447b8b62b | k__Bacteria | p__Firmicutes | c__Bacilli | o__Lactobacillales | f__Streptococcaceae | g__Streptococcus | NA |
| 40f08ff751166fd3cede946315c73f76 | k__Bacteria | p__Actinobacteriota | c__Coriobacteriia | o__Coriobacteriales | f__uncultured | g__uncultured | s__uncultured_bacterium |
| 97f9ce45bbf00eb0dc0db5b7e11e6aab | k__Bacteria | p__Actinobacteriota | c__Coriobacteriia | o__Coriobacteriales | f__Atopobiaceae | g__Atopobium | NA |
| 9a10a4240bbd0fb6b267de1cbc401651 | k__Bacteria | p__Firmicutes | c__Bacilli | o__Alicyclobacillales | f__Alicyclobacillaceae | g__Tumebacillus | NA |
| 7054b6ac948c1d9d17cfffc3ffafdc6a | k__Bacteria | p__Firmicutes | c__Bacilli | o__Alicyclobacillales | f__Alicyclobacillaceae | g__Tumebacillus | s__uncultured_Firmicutes |
| 7b28c20e72c6c95b3e604f0849245770 | k__Bacteria | p__Verrucomicrobiota | c__Verrucomicrobiae | o__Verrucomicrobiales | f__Akkermansiaceae | g__Akkermansia | s__Akkermansia_muciniphila |
| 45285d514ae9b6a9bfc5d09b7863f6f8 | k__Bacteria | p__Acidobacteriota | c__Blastocatellia | o__Blastocatellales | f__Blastocatellaceae | g__Blastocatella | NA |
| fc365e75b4a6ab38eecb084ef709c308 | k__Bacteria | p__Armatimonadota | c__uncultured | o__uncultured | f__uncultured | g__uncultured | NA |
| 74c80747312f035e999fed9e4eb935a1 | k__Bacteria | p__Acidobacteriota | c__Acidobacteriae | o__Acidobacteriales | f_Acidobacteriaceae(Subgroup_1) | g__Terriglobus | NA |
| 57c2dccb6adba677d7c6bfe138d887fd | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Sphingomonadales | f__Sphingomonadaceae | g__Sphingomonas | NA |
| bcba47620c299fd34809f143e3d26dff | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Sphingomonadales | f__Sphingomonadaceae | g__Sphingomonas | NA |
| b5c8ed4496d79b916859402cdf11f0a7 | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Sphingomonadales | f__Sphingomonadaceae | g__Sphingomonas | NA |
| 9ac3bb1d7dedb08a012692a6f536b5af | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Sphingomonadales | f__Sphingomonadaceae | g__Sphingomonas | NA |
| 79d4aa809f431563e812c9b2bc8cdc82 | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Sphingomonadales | f__Sphingomonadaceae | g__Sphingomonas | NA |
| 6df622888bb6fd97a26850973d17ca34 | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Sphingomonadales | f__Sphingomonadaceae | g__Sphingomonas | NA |
| 1a883863725eead9924f1c1ae4f7f3da | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Sphingomonadales | f__Sphingomonadaceae | g__Altererythrobacter | s__Porphyrobacter_mercurialis |
| cb28c53c2cc535734f0575251909154c | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Sphingomonadales | f__Sphingomonadaceae | g__Novosphingobium | NA |
| 4b961b84716ac167392b11929d702643 | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Sphingomonadales | f__Sphingomonadaceae | g__Novosphingobium | NA |
| fd9d6b3b6e91b427f130a704a3919d2e | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Rhodobacterales | f__Rhodobacteraceae | g__Paracoccus | NA |
| 645ff217bde3ad38899f4ef8c4d9acad | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Rhizobiales | f__Rhizobiaceae | g__Mesorhizobium | NA |
| b3291a2a85ebf15ba10983ef1ee0223a | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Rhizobiales | f__Devosiaceae | g__Devosia | NA |
| fc6622c636a5210293fb2873fc4761d9 | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Rhizobiales | f__Rhizobiaceae | g__Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium | NA |
| cbe9e5f34c7b6768d85759c1248cfddd | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Rhizobiales | f__Rhizobiaceae | g__Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium | NA |
| 06bb3fa895e072e060638ec1131d0d3c | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Rhizobiales | f__Rhizobiaceae | g__Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium | NA |
| ebdf0e5fb071c5c630db42b089a088b7 | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Acetobacterales | f__Acetobacteraceae | g__Roseomonas | NA |
| b2bac62667dd5b7b46224f0fdf1b2265 | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Caulobacterales | f__Caulobacteraceae | g__uncultured | NA |
| 7ad886bb493ed298c1778ec6a0597c5c | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Caulobacterales | f__Caulobacteraceae | g__Brevundimonas | NA |
| a537d8bab85c83b0e74c73c55790324b | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Caulobacterales | f__Caulobacteraceae | g__Brevundimonas | NA |
| 8b9e18c3af0357ee00702396af81803b | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Caulobacterales | f__Caulobacteraceae | g__Brevundimonas | NA |
| fca290ee2c3fa91836b16a633cf02585 | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Caulobacterales | f__Caulobacteraceae | g__Brevundimonas | NA |
| 6326363cc12189a386d6c9e5c711038d | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Caulobacterales | f__Caulobacteraceae | g__Asticcacaulis | NA |
| ab6b7b90747341ce39f82d0a22a1d37d | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Rhizobiales | f__Beijerinckiaceae | g__Methylobacterium-Methylorubrum | NA |
| c4f7f7d843eca4862537b5052067f2bb | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Rhizobiales | f__Beijerinckiaceae | g__Methylobacterium-Methylorubrum | s__Methylobacterium_jeotgali |
| 3d3f89fadf28973358458a50d436e91e | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Rhizobiales | f__Beijerinckiaceae | g__Methylobacterium-Methylorubrum | s__Methylobacterium_aerolatum |
| bac3c0867719c02b3aba4b8343759c33 | k__Bacteria | p__Desulfobacterota | c__Desulfovibrionia | o__Desulfovibrionales | f__Desulfovibrionaceae | g__Desulfovibrio | NA |
| 12392e67db62c8e9a290f91ff957b2d2 | k__Bacteria | p__Desulfobacterota | c__Desulfovibrionia | o__Desulfovibrionales | f__Desulfovibrionaceae | g__Desulfovibrio | NA |
| 74792adac452eb3544cdc17064d6bbee | k__Bacteria | p__Desulfobacterota | c__Desulfovibrionia | o__Desulfovibrionales | f__Desulfovibrionaceae | g__Desulfovibrio | NA |
| 3d59754994ad442a8c7e69589d74a6ce | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pseudomonadales | f__Moraxellaceae | g__Moraxella | NA |
| 1e766995d5d899c5028f77afef6bff77 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pseudomonadales | f__Moraxellaceae | g__Moraxella | NA |
| 96536c137cc245cdb18aa943e30eba06 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pseudomonadales | f__Moraxellaceae | g__Alkanindiges | NA |
| 19242d6e262c55c76fdde74fbd05d9ad | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pseudomonadales | f__Moraxellaceae | g__Acinetobacter | NA |
| a6be27329e6caf441973dafe2b0c303d | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pseudomonadales | f__Moraxellaceae | g__Acinetobacter | NA |
| 85f7a5b552a1d4564bbfb316eafdf2bf | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pseudomonadales | f__Moraxellaceae | g__Acinetobacter | NA |
| 450eece0641870cd6ca54c9e5f0208e9 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Cardiobacteriales | f__Cardiobacteriaceae | g__Cardiobacterium | NA |
| 5737e058385a6a34a3bcfdec9f73df47 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Cardiobacteriales | f__Cardiobacteriaceae | g__Cardiobacterium | s__uncultured_bacterium |
| f1dba3ac75a97b30c9f63c29e7e64cc5 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Cardiobacteriales | f__Cardiobacteriaceae | g__Cardiobacterium | NA |
| 5249851d64d7ae50c21aee46d07f7b08 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__uncultured | s__Bisgaard_Taxon |
| 5a39170d65625048b4ff1a2465563092 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__uncultured | s__Bisgaard_Taxon |
| b74d9f40f90058164720cbb8531c7c90 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__uncultured | s__Bisgaard_Taxon |
| bc54df7b889fb90fadcb7f804d05d8a0 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__uncultured | s__Bisgaard_Taxon |
| 9b9c893d7f6ce1adb95f07ce2c42960e | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__uncultured | s__Bisgaard_Taxon |
| 38185326e140564bb33e80e4f24b8f90 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__uncultured | s__Bisgaard_Taxon |
| 54c0b458c79be85647cd3cff8e66059b | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__uncultured | s__Bisgaard_Taxon |
| f057bbc717309187476ebe2dfaaf896e | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Rodentibacter | NA |
| 08eea0c16a6996628e45a8f5ad6dbd75 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Rodentibacter | NA |
| 3778c8917a8a5499a2491f640765259b | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Rodentibacter | NA |
| e56768537f475580b0a6214d82fbbd2c | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Rodentibacter | NA |
| a7c6d28b5e1b2324721f2dff0e1e8fb5 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Haemophilus | NA |
| e78ecb138a8bee2a728274b849db12c1 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Aggregatibacter | NA |
| 4bc29222703188e33f91bbc7f5e197cf | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Aggregatibacter | s__Aggregatibacter_actinomycetemcomitans |
| 6009d6fc8b150038745fe8ccf3cf5ef0 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Aggregatibacter | s__Aggregatibacter_actinomycetemcomitans |
| 5a1f8ea54d04e18a7c14a5d2306a842f | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Aggregatibacter | s__Aggregatibacter_actinomycetemcomitans |
| 0891a144fc69f813d70a273cb534b6b0 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Actinobacillus | NA |
| 09ea62c69c07eb44d971e83b2ce87219 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Actinobacillus | NA |
| b444c203840973d0159068701564fceb | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Actinobacillus | NA |
| d1330b8de9059f713830c82d88f3cc1b | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Actinobacillus | NA |
| 1c6676f6f82c2c187e35a381043cd8a8 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Actinobacillus | NA |
| acff851a5437a518fdb83cffd7b43dae | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Actinobacillus | s__Haemophilus_parahaemolyticus |
| ebb890eaad754182c5a491a7d6c3fb8b | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Actinobacillus | NA |
| 59f7d8a7f37d6eeec95eb556f33da267 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Actinobacillus | NA |
| c1b603f83feeccc82b783143e3a970f9 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Actinobacillus | NA |
| d998dd3fa19c17b739083a1ba1553dd1 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Rodentibacter | NA |
| 7b881ac7680c0ccc0253deb22f230e1e | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Rodentibacter | NA |
| 1719b5b8f753472e4f4d58ec01a1693c | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Rodentibacter | NA |
| 53e8f34b14b34a85e09d2cad651f71ae | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pasteurellales | f__Pasteurellaceae | g__Rodentibacter | NA |
| 5e433b20d9dee2171f80dad0383d8357 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Rhodocyclaceae | g__Propionivibrio | NA |
| a05aec2d8945f8d5c15e1575515202b7 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Burkholderiaceae | g__Lautropia | NA |
| f4801b7a68515d9005fa572ee6afdf41 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Burkholderiaceae | g__Ralstonia | NA |
| abd34643df4e48940286e05ff8518132 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Oxalobacteraceae | g__Undibacterium | NA |
| 4608fae4bbc9964cdd17af8782f2155e | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Oxalobacteraceae | g__Massilia | NA |
| 8df2b2e6c1cb64bd18b81d5bae7f0898 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Oxalobacteraceae | g__Massilia | NA |
| ca6c2b3b469c08212142e8821c65882a | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Oxalobacteraceae | g__Massilia | NA |
| 6ef289e78d35a0091f18292b3d49d471 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Neisseriaceae | g__Alysiella | NA |
| dac91e8bb4941252d8a158fef91c04dd | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Neisseriaceae | g__Alysiella | NA |
| 1ec3448328311caec18abb5e28c5cccf | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Neisseriaceae | g__Kingella | s__uncultured_bacterium |
| b9036f07db75f286b5805c03c1ac4320 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Neisseriaceae | g__Neisseria | s__Neisseria_oralis |
| e1d4f1eb76345f33375935a9f39dbde1 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Neisseriaceae | g__Neisseria | NA |
| a713e827c5a2626f7505099dc81a21b9 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Neisseriaceae | g__Neisseria | NA |
| 4f5efd25dacb5d639316e7291ff6ff8b | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Neisseriaceae | g__Neisseria | NA |
| 53f6674af6b3540c68d03f52f706afc3 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Neisseriaceae | g__Neisseria | NA |
| f1860fe716257bd5fd5c4c6a16cf3b95 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Burkholderiales | f__Neisseriaceae | g__Neisseria | NA |
| 9ec111134b7f857a1d270b470fbf331e | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Helicobacteraceae | g__Helicobacter | s__Helicobacter_fennelliae |
| 534a87137f5cda736f0a6c2b284feeb4 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| 740d90e488e102d30a456e0be1424529 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| adbb89fbfcc11ff19346f6aeb9280e9a | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| 05af8312a092f309b269c945433c8793 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| 0df4da5e81f847ea64d7b6ac86939c07 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| 38b148b47cb8a9c1f05e1acbd1aede41 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| 660d9218a1dcdd1a2c76772bd32a09e3 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| c93b4ca3ad027d51d34b0a709e5c8e7d | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| e66c2bc92d5b9f582ab65e1b557566d0 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| bf35f4019fc184fb342f34cc388ae989 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| 700ccbd453cc5809e234cee03ff7441d | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| b0c70610dfa252ae7d04f3c8703cc487 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| ff6211d2bd501975fa7f02a82e9941ce | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| 2b469462420172d5e0cbd09f01470284 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_canadensis |
| cb1c6b2a65a978f942ed88a1a18a647d | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | NA |
| 1e0534062d4980cfbf7b2f7527fd3096 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | NA |
| 98489635e6eb9f5984ffa6a09550122b | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | NA |
| ea74b1e5fc10fb3a74f2825d6865d740 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | NA |
| 139e832c69fb177d68bb0f5cb8594845 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | NA |
| c3a43e9dca56be145dbc08c893128e6f | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | s__Campylobacter_showae |
| 26973a1da4599bd0f344655b62b2cc23 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | NA |
| 70bd26abb09389c3b2492d86d40898cf | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | NA |
| 2c7f71a361403e18f79bf7f4cf3afb87 | k__Bacteria | p__Campilobacterota | c__Campylobacteria | o__Campylobacterales | f__Campylobacteraceae | g__Campylobacter | NA |
| 46edd9a681a1c394007859666f76d477 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Xanthomonadales | f__Rhodanobacteraceae | g__Luteibacter | NA |
| 70869d0feda2b000386a1851bdfcaffe | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Xanthomonadales | f__Rhodanobacteraceae | g__Dokdonella | NA |
| be74cad9381c15cfaa8e6071aa77e7f4 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Xanthomonadales | f__Xanthomonadaceae | g__Stenotrophomonas | NA |
| 912f795ef3617aeb65ff9ad69b9567a8 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Xanthomonadales | f__Xanthomonadaceae | g__Stenotrophomonas | NA |
| 6f7d59283d979b17a9834ab4c26d0076 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Xanthomonadales | f__Xanthomonadaceae | g__Stenotrophomonas | NA |
| 970a0f4184a8820116f827e881f75110 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Legionellales | f__Legionellaceae | g__Legionella | NA |
| be97c9932a0a5035cac26dac49a66eb2 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Oceanospirillales | f__Alcanivoracaceae1 | g__Alcanivorax | NA |
| 60f05f9e5d7e74d85a0f74164adcbd07 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pseudomonadales | f__Pseudomonadaceae | g__Pseudomonas | NA |
| 77a1e8bc25be2a0afd352762ed9497ce | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pseudomonadales | f__Pseudomonadaceae | g__Pseudomonas | NA |
| 86d6db0b6e15510fa5d27ceae8fd5e0d | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pseudomonadales | f__Pseudomonadaceae | g__Pseudomonas | NA |
| b4289ab0a9a00034c1fbce477b2c4ded | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pseudomonadales | f__Pseudomonadaceae | g__Pseudomonas | NA |
| 6376ea6dab7d0fde3cd66f53b57e1484 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pseudomonadales | f__Pseudomonadaceae | g__Pseudomonas | NA |
| 637b9b3f4d1cbb1a10c07817619cdf69 | k__Bacteria | p__Proteobacteria | c__Gammaproteobacteria | o__Pseudomonadales | f__Pseudomonadaceae | g__Pseudomonas | NA |
| 463448be7fe6ae1e5a096e746e6974c5 | k__Bacteria | p__Acidobacteriota | c__Vicinamibacteria | o__Vicinamibacterales | f__Vicinamibacteraceae | g__Vicinamibacteraceae | s__wastewater_metagenome |
| 32baf769cef5dfd68415214f4901ad8e | k__Bacteria | p__Latescibacterota | c__Latescibacterota | o__Latescibacterota | f__Latescibacterota | g__Latescibacterota | s__saltmarsh_clone |
| 4972757722cb02031094addcf082bb27 | k__Bacteria | p__Dadabacteria | c__Dadabacteriia | o__Dadabacteriales | f__Dadabacteriales | g__Dadabacteriales | s__uncultured_candidate |
| SampleID | Treatment | site | Site_status | sex | log10_cfu.gm | IL8_Lavage | IL8_Plasma | |
|---|---|---|---|---|---|---|---|---|
| LMiller_43630.BAL | LMiller_43630.BAL | H.pylori_(-) | BAL | H.pylori_(-)_BAL | Female | 0.00 | 19.104 | 1075.626 |
| LMiller_43630.Swab | LMiller_43630.Swab | H.pylori_(-) | Swab | H.pylori_(-)_Swab | Female | 0.00 | 19.104 | 1075.626 |
| LMiller_43752.BAL | LMiller_43752.BAL | H.pylori_(-) | BAL | H.pylori_(-)_BAL | Female | 0.00 | NA | 463.376 |
| LMiller_43752.Swab | LMiller_43752.Swab | H.pylori_(-) | Swab | H.pylori_(-)_Swab | Female | 0.00 | NA | 463.376 |
| LMiller_43753.BAL | LMiller_43753.BAL | H.pylori_(-) | BAL | H.pylori_(-)_BAL | Female | 0.00 | NA | 258.416 |
| LMiller_43753.Swab | LMiller_43753.Swab | H.pylori_(-) | Swab | H.pylori_(-)_Swab | Female | 0.00 | NA | 258.416 |
| LMiller_43767.BAL | LMiller_43767.BAL | H.pylori_(+) | BAL | H.pylori_(+)_BAL | Female | 7.66 | NA | 704.550 |
| LMiller_43767.Swab | LMiller_43767.Swab | H.pylori_(+) | Swab | H.pylori_(+)_Swab | Female | 7.66 | NA | 704.550 |
| LMiller_43768.BAL | LMiller_43768.BAL | H.pylori_(+) | BAL | H.pylori_(+)_BAL | Female | 6.38 | NA | 1279.789 |
| LMiller_43768.Swab | LMiller_43768.Swab | H.pylori_(+) | Swab | H.pylori_(+)_Swab | Female | 6.38 | NA | 1279.789 |
| LMiller_43803.BAL | LMiller_43803.BAL | H.pylori_(-) | BAL | H.pylori_(-)_BAL | Female | 0.00 | 20.100 | 608.508 |
| LMiller_43803.Swab | LMiller_43803.Swab | H.pylori_(-) | Swab | H.pylori_(-)_Swab | Female | 0.00 | 20.100 | 608.508 |
| LMiller_43829.BAL | LMiller_43829.BAL | H.pylori_(+) | BAL | H.pylori_(+)_BAL | Female | 5.81 | NA | 715.056 |
| LMiller_43829.Swab | LMiller_43829.Swab | H.pylori_(+) | Swab | H.pylori_(+)_Swab | Female | 5.81 | NA | 715.056 |
| LMiller_43858.BAL | LMiller_43858.BAL | H.pylori_(+) | BAL | H.pylori_(+)_BAL | Female | 3.81 | 11.201 | 642.148 |
| LMiller_43858.Swab | LMiller_43858.Swab | H.pylori_(+) | Swab | H.pylori_(+)_Swab | Female | 3.81 | 11.201 | 642.148 |
| LMiller_43880.BAL | LMiller_43880.BAL | H.pylori_(-) | BAL | H.pylori_(-)_BAL | Female | 0.00 | 17.622 | NA |
| LMiller_43880.Swab | LMiller_43880.Swab | H.pylori_(-) | Swab | H.pylori_(-)_Swab | Female | 0.00 | 17.622 | NA |
| LMiller_43882.BAL | LMiller_43882.BAL | H.pylori_(+) | BAL | H.pylori_(+)_BAL | Female | 6.09 | 15.511 | 425.782 |
| LMiller_43882.Swab | LMiller_43882.Swab | H.pylori_(+) | Swab | H.pylori_(+)_Swab | Female | 6.09 | 15.511 | 425.782 |
| LMiller_43900.BAL | LMiller_43900.BAL | H.pylori_(+) | BAL | H.pylori_(+)_BAL | Female | 5.48 | NA | 476.431 |
| LMiller_43900.Swab | LMiller_43900.Swab | H.pylori_(+) | Swab | H.pylori_(+)_Swab | Female | 5.48 | NA | 476.431 |
| LMiller_43915.BAL | LMiller_43915.BAL | H.pylori_(-) | BAL | H.pylori_(-)_BAL | Female | 0.00 | 15.511 | 660.911 |
| LMiller_43915.Swab | LMiller_43915.Swab | H.pylori_(-) | Swab | H.pylori_(-)_Swab | Female | 0.00 | 15.511 | 660.911 |
| LMiller_43828.BAL | LMiller_43828.BAL | H.pylori_(-) | BAL | H.pylori_(-)_BAL | Female | 0.00 | 11.590 | 423.590 |
| LMiller_43964.BAL | LMiller_43964.BAL | H.pylori_(-) | BAL | H.pylori_(-)_BAL | Female | 0.00 | 44.699 | 443.989 |
| OR | 2.5 % | 97.5 % | p | |
|---|---|---|---|---|
| (Intercept) | 0.008 | 0.000 | 12.150 | 0.247 |
| infant_weight_kg | 106.531 | 0.009 | 6800129.217 | 0.344 |
| age_days_infants | 0.994 | 0.925 | 1.062 | 0.852 |
| il_bal_pg.ml | 0.976 | 0.863 | 1.095 | 0.668 |
| il_plasma_pg.ml | 0.999 | 0.996 | 1.002 | 0.688 |
This plot only includes animals that had material sequenced and not all 25 animals from the study
This plot only includes animals that had material sequenced and not all 25 animals from the study
## [1] "microtable" "R6"
## [1] "microtable" "R6"
## [1] "microtable" "R6"
## [1] "microtable" "R6"
| Taxa | Group | pvalue | LDA | |
|---|---|---|---|---|
| k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria | H.pylori_(-)_Swab | 6e-04 | 5.3652 |
| k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae | k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae | H.pylori_(+)_BAL | 1e-04 | 5.3296 |
| k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter | k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter | H.pylori_(+)_BAL | 1e-04 | 5.3296 |
| k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter|s__Campylobacter_canadensis | k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter|s__Campylobacter_canadensis | H.pylori_(+)_BAL | 1e-04 | 5.3296 |
| k__Bacteria|p__Campilobacterota | k__Bacteria|p__Campilobacterota | H.pylori_(+)_BAL | 1e-04 | 5.3272 |
## [1] "microtable" "R6"
| Taxa | Group | pvalue | LDA | |
|---|---|---|---|---|
| k__Bacteria|p__Proteobacteria | k__Bacteria|p__Proteobacteria | H.pylori_(-)_BAL | 0.0001 | 4.9393 |
| k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria | k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria | H.pylori_(-)_BAL | 0.0001 | 4.9360 |
| k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales | k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales | H.pylori_(-)_BAL | 0.0001 | 4.9360 |
| k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae | k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae | H.pylori_(-)_BAL | 0.0001 | 4.9360 |
| k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae|g__Methylobacterium-Methylorubrum | k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae|g__Methylobacterium-Methylorubrum | H.pylori_(-)_BAL | 0.0001 | 4.9360 |
| k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae|g__Methylobacterium-Methylorubrum|s__Methylobacterium_aerolatum | k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae|g__Methylobacterium-Methylorubrum|s__Methylobacterium_aerolatum | H.pylori_(-)_BAL | 0.0001 | 4.9043 |
| k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter|s__Campylobacter_canadensis | k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter|s__Campylobacter_canadensis | H.pylori_(+)_BAL | 0.0001 | 4.8700 |
| k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae | k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae | H.pylori_(+)_BAL | 0.0001 | 4.8559 |
| k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter | k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter | H.pylori_(+)_BAL | 0.0001 | 4.8559 |
| k__Bacteria|p__Campilobacterota|c__Campylobacteria | k__Bacteria|p__Campilobacterota|c__Campylobacteria | H.pylori_(+)_BAL | 0.0001 | 4.8504 |
| k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales | k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales | H.pylori_(+)_BAL | 0.0001 | 4.8504 |
| k__Bacteria|p__Campilobacterota | k__Bacteria|p__Campilobacterota | H.pylori_(+)_BAL | 0.0001 | 4.8504 |
| k__Bacteria|p__Bacteroidota|c__Bacteroidia | k__Bacteria|p__Bacteroidota|c__Bacteroidia | H.pylori_(-)_BAL | 0.0001 | 4.4242 |
| k__Bacteria|p__Bacteroidota | k__Bacteria|p__Bacteroidota | H.pylori_(-)_BAL | 0.0001 | 4.4242 |
| k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales | H.pylori_(-)_BAL | 0.0001 | 4.4047 |
| k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae | H.pylori_(-)_BAL | 0.0001 | 4.3884 |
| k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium | H.pylori_(-)_BAL | 0.0001 | 4.3884 |
| k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium|s__Flavobacterium_ceti | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium|s__Flavobacterium_ceti | H.pylori_(-)_BAL | 0.0001 | 4.3884 |
| k__Bacteria|p__Firmicutes | k__Bacteria|p__Firmicutes | H.pylori_(+)_BAL | 0.0092 | 4.1755 |
| k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales | H.pylori_(-)_BAL | 0.0092 | 4.1711 |
| k__Bacteria|p__Firmicutes|c__Clostridia | k__Bacteria|p__Firmicutes|c__Clostridia | H.pylori_(+)_BAL | 0.0092 | 3.9480 |
| k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales | H.pylori_(-)_BAL | 0.0059 | 3.5843 |
| k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae | H.pylori_(-)_BAL | 0.0059 | 3.5843 |
| k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium | H.pylori_(-)_BAL | 0.0059 | 3.5843 |
| k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium|s__Sphingobacterium_spiritivorum | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium|s__Sphingobacterium_spiritivorum | H.pylori_(-)_BAL | 0.0059 | 3.5843 |
## [1] "microtable" "R6"
| Taxa | Group | pvalue | LDA | |
|---|---|---|---|---|
| k__Bacteria|p__Proteobacteria | k__Bacteria|p__Proteobacteria | H.pylori_(-)_Swab | 0.0005 | 5.0194 |
| k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria | H.pylori_(-)_Swab | 0.0039 | 4.9507 |
| k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae | k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae | H.pylori_(+)_Swab | 0.0039 | 4.9431 |
| k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae|g__Leptotrichia | k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae|g__Leptotrichia | H.pylori_(+)_Swab | 0.0039 | 4.9431 |
| k__Bacteria|p__Fusobacteriota|c__Fusobacteriia | k__Bacteria|p__Fusobacteriota|c__Fusobacteriia | H.pylori_(+)_Swab | 0.0039 | 4.9419 |
| k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales | k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales | H.pylori_(+)_Swab | 0.0039 | 4.9419 |
| k__Bacteria|p__Fusobacteriota | k__Bacteria|p__Fusobacteriota | H.pylori_(+)_Swab | 0.0039 | 4.9419 |
| k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae|g__Leptotrichia|s__Leptotrichia_hongkongensis | k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae|g__Leptotrichia|s__Leptotrichia_hongkongensis | H.pylori_(+)_Swab | 0.0059 | 4.8970 |
| k__Bacteria|p__Patescibacteria | k__Bacteria|p__Patescibacteria | H.pylori_(-)_Swab | 0.0092 | 4.6171 |
| k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales | H.pylori_(-)_Swab | 0.0039 | 4.5667 |
| k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae | H.pylori_(-)_Swab | 0.0039 | 4.5667 |
| k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter | H.pylori_(+)_Swab | 0.0039 | 4.4369 |
| k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter|s__Aggregatibacter_actinomycetemcomitans | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter|s__Aggregatibacter_actinomycetemcomitans | H.pylori_(+)_Swab | 0.0039 | 4.4369 |
## PC1 PC2 PC3 PC4 PC5 PC6 PC7
## 1 0.4021467 0.09090582 0.08138569 0.062772 0.05394058 0.04662365 0.03972275
## PC8 PC9 PC10 PC11 PC12 PC13 PC14
## 1 0.0295293 0.02891775 0.02446856 0.02241743 0.02158047 0.02015346 0.01845675
## PC15 PC16 PC17 PC18 PC19 PC20
## 1 0.01521443 0.01090891 0.009670169 0.008390709 0.005297191 0.002936364
## PC21 PC22 PC23 PC24 PC25 PC26
## 1 0.002776213 0.001276067 0.0004805568 2.849422e-05 0 0
| Groups | Measure | Test method | p.value | Significance |
|---|---|---|---|---|
| H.pylori_(-)BAL vs H.pylori(-)_Swab | Observed | KW | 0.244 | |
| H.pylori_(-)BAL vs H.pylori(+)_BAL | Observed | KW | 0.698 | |
| H.pylori_(-)BAL vs H.pylori(+)_Swab | Observed | KW | 0.120 | |
| H.pylori_(-)Swab vs H.pylori(+)_BAL | Observed | KW | 0.296 | |
| H.pylori_(-)Swab vs H.pylori(+)_Swab | Observed | KW | 0.470 | |
| H.pylori_(+)BAL vs H.pylori(+)_Swab | Observed | KW | 0.109 | |
| H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab | Observed | KW | 0.248 | |
| H.pylori_(-)BAL vs H.pylori(-)_Swab | Chao1 | KW | 0.244 | |
| H.pylori_(-)BAL vs H.pylori(+)_BAL | Chao1 | KW | 0.698 | |
| H.pylori_(-)BAL vs H.pylori(+)_Swab | Chao1 | KW | 0.120 | |
| H.pylori_(-)Swab vs H.pylori(+)_BAL | Chao1 | KW | 0.296 | |
| H.pylori_(-)Swab vs H.pylori(+)_Swab | Chao1 | KW | 0.470 | |
| H.pylori_(+)BAL vs H.pylori(+)_Swab | Chao1 | KW | 0.109 | |
| H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab | Chao1 | KW | 0.248 | |
| H.pylori_(-)BAL vs H.pylori(-)_Swab | ACE | KW | 0.244 | |
| H.pylori_(-)BAL vs H.pylori(+)_BAL | ACE | KW | 0.698 | |
| H.pylori_(-)BAL vs H.pylori(+)_Swab | ACE | KW | 0.120 | |
| H.pylori_(-)Swab vs H.pylori(+)_BAL | ACE | KW | 0.296 | |
| H.pylori_(-)Swab vs H.pylori(+)_Swab | ACE | KW | 0.470 | |
| H.pylori_(+)BAL vs H.pylori(+)_Swab | ACE | KW | 0.109 | |
| H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab | ACE | KW | 0.248 | |
| H.pylori_(-)BAL vs H.pylori(-)_Swab | Shannon | KW | 0.439 | |
| H.pylori_(-)BAL vs H.pylori(+)_BAL | Shannon | KW | 1.000 | |
| H.pylori_(-)BAL vs H.pylori(+)_Swab | Shannon | KW | 0.796 | |
| H.pylori_(-)Swab vs H.pylori(+)_BAL | Shannon | KW | 0.109 | |
| H.pylori_(-)Swab vs H.pylori(+)_Swab | Shannon | KW | 0.337 | |
| H.pylori_(+)BAL vs H.pylori(+)_Swab | Shannon | KW | 0.423 | |
| H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab | Shannon | KW | 0.540 | |
| H.pylori_(-)BAL vs H.pylori(-)_Swab | Simpson | KW | 0.519 | |
| H.pylori_(-)BAL vs H.pylori(+)_BAL | Simpson | KW | 0.699 | |
| H.pylori_(-)BAL vs H.pylori(+)_Swab | Simpson | KW | 0.699 | |
| H.pylori_(-)Swab vs H.pylori(+)_BAL | Simpson | KW | 0.109 | |
| H.pylori_(-)Swab vs H.pylori(+)_Swab | Simpson | KW | 0.423 | |
| H.pylori_(+)BAL vs H.pylori(+)_Swab | Simpson | KW | 0.262 | |
| H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab | Simpson | KW | 0.493 | |
| H.pylori_(-)BAL vs H.pylori(-)_Swab | InvSimpson | KW | 0.519 | |
| H.pylori_(-)BAL vs H.pylori(+)_BAL | InvSimpson | KW | 0.699 | |
| H.pylori_(-)BAL vs H.pylori(+)_Swab | InvSimpson | KW | 0.699 | |
| H.pylori_(-)Swab vs H.pylori(+)_BAL | InvSimpson | KW | 0.109 | |
| H.pylori_(-)Swab vs H.pylori(+)_Swab | InvSimpson | KW | 0.423 | |
| H.pylori_(+)BAL vs H.pylori(+)_Swab | InvSimpson | KW | 0.262 | |
| H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab | InvSimpson | KW | 0.493 | |
| H.pylori_(-)BAL vs H.pylori(-)_Swab | Fisher | KW | 0.519 | |
| H.pylori_(-)BAL vs H.pylori(+)_BAL | Fisher | KW | 0.796 | |
| H.pylori_(-)BAL vs H.pylori(+)_Swab | Fisher | KW | 0.606 | |
| H.pylori_(-)Swab vs H.pylori(+)_BAL | Fisher | KW | 0.522 | |
| H.pylori_(-)Swab vs H.pylori(+)_Swab | Fisher | KW | 0.631 | |
| H.pylori_(+)BAL vs H.pylori(+)_Swab | Fisher | KW | 1.000 | |
| H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab | Fisher | KW | 0.877 | |
| H.pylori_(-)BAL vs H.pylori(-)_Swab | Coverage | KW | NaN | NA |
| H.pylori_(-)BAL vs H.pylori(+)_BAL | Coverage | KW | NaN | NA |
| H.pylori_(-)BAL vs H.pylori(+)_Swab | Coverage | KW | NaN | NA |
| H.pylori_(-)Swab vs H.pylori(+)_BAL | Coverage | KW | NaN | NA |
| H.pylori_(-)Swab vs H.pylori(+)_Swab | Coverage | KW | NaN | NA |
| H.pylori_(+)BAL vs H.pylori(+)_Swab | Coverage | KW | NaN | NA |
| H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab | Coverage | KW | NaN | NA |
| H.pylori_(-)BAL vs H.pylori(-)_Swab | PD | KW | 0.366 | |
| H.pylori_(-)BAL vs H.pylori(+)_BAL | PD | KW | 0.606 | |
| H.pylori_(-)BAL vs H.pylori(+)_Swab | PD | KW | 0.366 | |
| H.pylori_(-)Swab vs H.pylori(+)_BAL | PD | KW | 0.423 | |
| H.pylori_(-)Swab vs H.pylori(+)_Swab | PD | KW | 0.873 | |
| H.pylori_(+)BAL vs H.pylori(+)_Swab | PD | KW | 0.631 | |
| H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab | PD | KW | 0.699 |
Microbiota Composition at Phylum level.
Microbiota Composition at Phylum level.
| Taxonomy | Sample | Average Percent Abundance |
|---|---|---|
| Acidobacteriota | H.pylori_(+)_BAL | 0.1% |
| Actinobacteriota | H.pylori_(-)_BAL | 3.1% |
| Actinobacteriota | H.pylori_(+)_BAL | 1.8% |
| Actinobacteriota | H.pylori_(+)_Swab | 0.1% |
| Actinobacteriota | H.pylori_(-)_Swab | 0% |
| Bacteroidota | H.pylori_(+)_BAL | 21.5% |
| Bacteroidota | H.pylori_(+)_Swab | 17.4% |
| Bacteroidota | H.pylori_(-)_BAL | 15% |
| Bacteroidota | H.pylori_(-)_Swab | 10.8% |
| Campilobacterota | H.pylori_(+)_BAL | 12.9% |
| Campilobacterota | H.pylori_(-)_BAL | 7.7% |
| Campilobacterota | H.pylori_(-)_Swab | 0% |
| Deinococcota | H.pylori_(+)_BAL | 0.6% |
| Desulfobacterota | H.pylori_(-)_BAL | 0.1% |
| Firmicutes | H.pylori_(-)_BAL | 30.9% |
| Firmicutes | H.pylori_(+)_Swab | 21.7% |
| Firmicutes | H.pylori_(-)_Swab | 21.1% |
| Firmicutes | H.pylori_(+)_BAL | 15.2% |
| Fusobacteriota | H.pylori_(+)_Swab | 9.8% |
| Fusobacteriota | H.pylori_(+)_BAL | 8.8% |
| Fusobacteriota | H.pylori_(-)_BAL | 7.7% |
| Fusobacteriota | H.pylori_(-)_Swab | 7% |
| Latescibacterota | H.pylori_(-)_BAL | 0% |
| Patescibacteria | H.pylori_(-)_Swab | 0.4% |
| Patescibacteria | H.pylori_(+)_Swab | 0.3% |
| Patescibacteria | H.pylori_(+)_BAL | 0.2% |
| Patescibacteria | H.pylori_(-)_BAL | 0% |
| Proteobacteria | H.pylori_(-)_Swab | 60.7% |
| Proteobacteria | H.pylori_(+)_Swab | 50.7% |
| Proteobacteria | H.pylori_(+)_BAL | 39% |
| Proteobacteria | H.pylori_(-)_BAL | 34.6% |
| Spirochaetota | H.pylori_(-)_BAL | 0.7% |
Microbiota Composition at Class level.
Microbiota Composition at Class level.
| Taxonomy | Sample | Average Percent Abundance |
|---|---|---|
| Actinobacteria | H.pylori_(-)_BAL | 3.1% |
| Actinobacteria | H.pylori_(+)_BAL | 1.7% |
| Alphaproteobacteria | H.pylori_(+)_BAL | 14.7% |
| Alphaproteobacteria | H.pylori_(-)_BAL | 10.8% |
| Bacilli | H.pylori_(-)_BAL | 25.7% |
| Bacilli | H.pylori_(-)_Swab | 14.9% |
| Bacilli | H.pylori_(+)_Swab | 14.2% |
| Bacilli | H.pylori_(+)_BAL | 9.6% |
| Bacteroidia | H.pylori_(+)_BAL | 21.5% |
| Bacteroidia | H.pylori_(+)_Swab | 17.4% |
| Bacteroidia | H.pylori_(-)_BAL | 15% |
| Bacteroidia | H.pylori_(-)_Swab | 10.8% |
| Campylobacteria | H.pylori_(+)_BAL | 12.9% |
| Campylobacteria | H.pylori_(-)_BAL | 7.7% |
| Clostridia | H.pylori_(-)_BAL | 2.8% |
| Clostridia | H.pylori_(+)_BAL | 1.5% |
| Clostridia | H.pylori_(+)_Swab | 0.4% |
| Clostridia | H.pylori_(-)_Swab | 0.4% |
| Deinococci | H.pylori_(+)_BAL | 0.6% |
| Fusobacteriia | H.pylori_(+)_Swab | 9.8% |
| Fusobacteriia | H.pylori_(+)_BAL | 8.8% |
| Fusobacteriia | H.pylori_(-)_BAL | 7.7% |
| Fusobacteriia | H.pylori_(-)_Swab | 7% |
| Gammaproteobacteria | H.pylori_(-)_Swab | 60.6% |
| Gammaproteobacteria | H.pylori_(+)_Swab | 50.7% |
| Gammaproteobacteria | H.pylori_(+)_BAL | 24.3% |
| Gammaproteobacteria | H.pylori_(-)_BAL | 23.8% |
| Negativicutes | H.pylori_(+)_Swab | 7% |
| Negativicutes | H.pylori_(-)_Swab | 5.8% |
| Negativicutes | H.pylori_(+)_BAL | 4.1% |
| Negativicutes | H.pylori_(-)_BAL | 2.4% |
| Spirochaetia | H.pylori_(-)_BAL | 0.7% |
Microbiota Composition at Order level.
Microbiota Composition at Order level.
| Taxonomy | Sample | Average Percent Abundance |
|---|---|---|
| Bacteroidales | H.pylori_(+)_Swab | 14.1% |
| Bacteroidales | H.pylori_(+)_BAL | 9.4% |
| Bacteroidales | H.pylori_(-)_Swab | 9.2% |
| Bacteroidales | H.pylori_(-)_BAL | 5.8% |
| Burkholderiales | H.pylori_(+)_BAL | 6.8% |
| Campylobacterales | H.pylori_(+)_BAL | 12.9% |
| Campylobacterales | H.pylori_(-)_BAL | 7.7% |
| Flavobacteriales | H.pylori_(+)_BAL | 11.5% |
| Flavobacteriales | H.pylori_(-)_BAL | 8.5% |
| Fusobacteriales | H.pylori_(+)_Swab | 9.8% |
| Fusobacteriales | H.pylori_(+)_BAL | 8.8% |
| Fusobacteriales | H.pylori_(-)_BAL | 7.7% |
| Fusobacteriales | H.pylori_(-)_Swab | 7% |
| Lactobacillales | H.pylori_(-)_BAL | 15.7% |
| Lactobacillales | H.pylori_(+)_Swab | 12.2% |
| Lactobacillales | H.pylori_(-)_Swab | 12% |
| Lactobacillales | H.pylori_(+)_BAL | 6% |
| Pasteurellales | H.pylori_(-)_Swab | 52.3% |
| Pasteurellales | H.pylori_(+)_Swab | 40.9% |
| Pasteurellales | H.pylori_(+)_BAL | 12% |
| Pasteurellales | H.pylori_(-)_BAL | 11.9% |
| Pseudomonadales | H.pylori_(-)_BAL | 10.8% |
| Pseudomonadales | H.pylori_(-)_Swab | 6.4% |
| Pseudomonadales | H.pylori_(+)_Swab | 6% |
| Pseudomonadales | H.pylori_(+)_BAL | 4.1% |
| Rhizobiales | H.pylori_(-)_BAL | 9.6% |
| Rhizobiales | H.pylori_(+)_BAL | 8.4% |
| Sphingomonadales | H.pylori_(+)_BAL | 5.8% |
| Staphylococcales | H.pylori_(-)_BAL | 9.8% |
| Veillonellales-Selenomonadales | H.pylori_(+)_Swab | 7% |
| Veillonellales-Selenomonadales | H.pylori_(-)_Swab | 5.8% |
| Veillonellales-Selenomonadales | H.pylori_(+)_BAL | 4.1% |
Microbiota Composition at Family level.
Microbiota Composition at Family level.
| Taxonomy | Sample | Average Percent Abundance |
|---|---|---|
| Beijerinckiaceae | H.pylori_(-)_BAL | 9.6% |
| Beijerinckiaceae | H.pylori_(+)_BAL | 8.2% |
| Campylobacteraceae | H.pylori_(+)_BAL | 12.9% |
| Campylobacteraceae | H.pylori_(-)_BAL | 7.7% |
| Flavobacteriaceae | H.pylori_(+)_BAL | 11.3% |
| Flavobacteriaceae | H.pylori_(-)_BAL | 8.4% |
| Fusobacteriaceae | H.pylori_(+)_BAL | 8.6% |
| Fusobacteriaceae | H.pylori_(+)_Swab | 8.3% |
| Fusobacteriaceae | H.pylori_(-)_BAL | 7.3% |
| Fusobacteriaceae | H.pylori_(-)_Swab | 6.6% |
| Moraxellaceae | H.pylori_(-)_BAL | 10.1% |
| Moraxellaceae | H.pylori_(-)_Swab | 6.4% |
| Moraxellaceae | H.pylori_(+)_Swab | 6% |
| Oxalobacteraceae | H.pylori_(+)_BAL | 4.9% |
| Pasteurellaceae | H.pylori_(-)_Swab | 52.3% |
| Pasteurellaceae | H.pylori_(+)_Swab | 40.9% |
| Pasteurellaceae | H.pylori_(+)_BAL | 12% |
| Pasteurellaceae | H.pylori_(-)_BAL | 11.9% |
| Porphyromonadaceae | H.pylori_(+)_Swab | 10.5% |
| Porphyromonadaceae | H.pylori_(-)_Swab | 5.9% |
| Porphyromonadaceae | H.pylori_(+)_BAL | 4.4% |
| Prevotellaceae | H.pylori_(+)_BAL | 4.3% |
| Prevotellaceae | H.pylori_(-)_BAL | 4.1% |
| Sphingomonadaceae | H.pylori_(+)_BAL | 5.8% |
| Staphylococcaceae | H.pylori_(-)_BAL | 8.1% |
| Streptococcaceae | H.pylori_(-)_BAL | 14.2% |
| Streptococcaceae | H.pylori_(+)_Swab | 12.2% |
| Streptococcaceae | H.pylori_(-)_Swab | 12% |
| Streptococcaceae | H.pylori_(+)_BAL | 4.9% |
| Veillonellaceae | H.pylori_(+)_Swab | 7% |
| Veillonellaceae | H.pylori_(-)_Swab | 5.8% |
| Veillonellaceae | H.pylori_(+)_BAL | 4% |
Microbiota Composition at Genus level.
Microbiota Composition at Genus level.
| Taxonomy | Sample | Average Percent Abundance |
|---|---|---|
| Acinetobacter | H.pylori_(-)_BAL | 10.1% |
| Actinobacillus | H.pylori_(-)_Swab | 33.1% |
| Actinobacillus | H.pylori_(+)_Swab | 28.1% |
| Actinobacillus | H.pylori_(-)_BAL | 6.6% |
| Actinobacillus | H.pylori_(+)_BAL | 5.9% |
| Campylobacter | H.pylori_(+)_BAL | 12.9% |
| Campylobacter | H.pylori_(-)_BAL | 7.7% |
| Flavobacterium | H.pylori_(+)_BAL | 11.3% |
| Flavobacterium | H.pylori_(-)_BAL | 8.4% |
| Fusobacterium | H.pylori_(+)_BAL | 8.6% |
| Fusobacterium | H.pylori_(+)_Swab | 8.3% |
| Fusobacterium | H.pylori_(-)_BAL | 7.3% |
| Fusobacterium | H.pylori_(-)_Swab | 6.6% |
| Massilia | H.pylori_(+)_BAL | 4.9% |
| Methylobacterium-Methylorubrum | H.pylori_(-)_BAL | 9.6% |
| Methylobacterium-Methylorubrum | H.pylori_(+)_BAL | 8.2% |
| Moraxella | H.pylori_(-)_Swab | 6.4% |
| Moraxella | H.pylori_(+)_Swab | 6% |
| Porphyromonas | H.pylori_(+)_Swab | 10.5% |
| Porphyromonas | H.pylori_(-)_Swab | 5.9% |
| Rodentibacter | H.pylori_(-)_Swab | 18.9% |
| Rodentibacter | H.pylori_(+)_Swab | 12% |
| Rodentibacter | H.pylori_(-)_BAL | 4.8% |
| Rodentibacter | H.pylori_(+)_BAL | 4.7% |
| Sphingomonas | H.pylori_(+)_BAL | 5.4% |
| Staphylococcus | H.pylori_(-)_BAL | 8.1% |
| Streptococcus | H.pylori_(-)_BAL | 14.2% |
| Streptococcus | H.pylori_(+)_Swab | 12.2% |
| Streptococcus | H.pylori_(-)_Swab | 12% |
| Streptococcus | H.pylori_(+)_BAL | 4.9% |
| Veillonella | H.pylori_(+)_Swab | 7% |
| Veillonella | H.pylori_(-)_Swab | 5.8% |
## [1] "microtable" "R6"
IL8 and lavage genus abundance Spearman correlations separated by H. pylori status
IL8 and lavage genus abundance Spearman correlations independent of H. pylori status
| Type | Taxa | Env | Correlation | Pvalue | AdjPvalue | Significance | |
|---|---|---|---|---|---|---|---|
| V1 | BAL | k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Brevundimonas | IL8_Lavage | 0.7356 | 0.0375 | 0.1502 | |
| V2 | BAL | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas | IL8_Lavage | -0.0960 | 0.8210 | 0.9193 | |
| V3 | BAL | k__Bacteria|p__Firmicutes|c__Bacilli|o__Staphylococcales|f__Staphylococcaceae|g__Staphylococcus | IL8_Lavage | 0.9297 | 0.0008 | 0.0164 |
|
| V4 | BAL | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Stenotrophomonas | IL8_Lavage | 0.8833 | 0.0036 | 0.0363 |
|
| V5 | BAL | k__Bacteria|p__Actinobacteriota|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia | IL8_Lavage | -0.1774 | 0.6743 | 0.9193 | |
| V6 | BAL | k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Leuconostocaceae|g__Leuconostoc | IL8_Lavage | -0.0706 | 0.8681 | 0.9193 | |
| V7 | BAL | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Rodentibacter | IL8_Lavage | -0.2285 | 0.5863 | 0.9193 | |
| V8 | BAL | k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter | IL8_Lavage | -0.0329 | 0.9384 | 0.9384 | |
| V9 | BAL | k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium | IL8_Lavage | -0.1928 | 0.6474 | 0.9193 | |
| V10 | BAL | k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus | IL8_Lavage | -0.1207 | 0.7758 | 0.9193 | |
| V11 | BAL | k__Bacteria|p__Firmicutes|c__Negativicutes|o__Veillonellales-Selenomonadales|f__Veillonellaceae|g__Veillonella | IL8_Lavage | -0.2519 | 0.5473 | 0.9193 | |
| V12 | BAL | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium | IL8_Lavage | 0.7950 | 0.0184 | 0.1224 | |
| V13 | BAL | k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae|g__Methylobacterium-Methylorubrum | IL8_Lavage | 0.7695 | 0.0256 | 0.1278 | |
| V14 | BAL | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Porphyromonadaceae|g__Porphyromonas | IL8_Lavage | -0.3268 | 0.4295 | 0.9193 | |
| V15 | BAL | k__Bacteria|p__Firmicutes|c__Bacilli|o__Staphylococcales|f__Gemellaceae|g__Gemella | IL8_Lavage | -0.0678 | 0.8733 | 0.9193 | |
| V16 | BAL | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium | IL8_Lavage | -0.2545 | 0.5430 | 0.9193 | |
| V17 | BAL | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Actinobacillus | IL8_Lavage | -0.2941 | 0.4796 | 0.9193 | |
| V18 | BAL | k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas | IL8_Lavage | -0.1599 | 0.7052 | 0.9193 | |
| V19 | BAL | k__Bacteria|p__Firmicutes|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerosporobacter | IL8_Lavage | -0.1884 | 0.6551 | 0.9193 | |
| V20 | BAL | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus | IL8_Lavage | -0.3512 | 0.3936 | 0.9193 |
IL8 and lavage alpha diversity Spearman correlations inpendent of H. pylori status.
| Type | Taxa | Env | Correlation | Pvalue | AdjPvalue | Significance | |
|---|---|---|---|---|---|---|---|
| V1 | All | Observed | IL8_Lavage | -0.7858 | 0.0208 | 0.0468 |
|
| V2 | All | Chao1 | IL8_Lavage | -0.7858 | 0.0208 | 0.0468 |
|
| V4 | All | ACE | IL8_Lavage | -0.7858 | 0.0208 | 0.0468 |
|
| V5 | All | se.ACE | IL8_Lavage | -0.4776 | 0.2314 | 0.3471 | |
| V6 | All | Shannon | IL8_Lavage | -0.3982 | 0.3286 | 0.4225 | |
| V7 | All | Simpson | IL8_Lavage | -0.1714 | 0.6849 | 0.6849 | |
| V8 | All | InvSimpson | IL8_Lavage | -0.3084 | 0.4573 | 0.5145 | |
| V9 | All | Fisher | IL8_Lavage | -0.6436 | 0.0851 | 0.1532 | |
| V11 | All | PD | IL8_Lavage | -0.8077 | 0.0153 | 0.0468 |
|
| V12 | All | Observed | IL8_Plasma | -0.4151 | 0.1584 | 0.4751 | |
| V13 | All | Chao1 | IL8_Plasma | -0.4151 | 0.1584 | 0.4751 | |
| V15 | All | ACE | IL8_Plasma | -0.4151 | 0.1584 | 0.4751 | |
| V16 | All | se.ACE | IL8_Plasma | -0.1092 | 0.7225 | 0.7225 | |
| V17 | All | Shannon | IL8_Plasma | 0.1741 | 0.5694 | 0.6838 | |
| V18 | All | Simpson | IL8_Plasma | 0.2567 | 0.3972 | 0.6838 | |
| V19 | All | InvSimpson | IL8_Plasma | 0.1573 | 0.6078 | 0.6838 | |
| V20 | All | Fisher | IL8_Plasma | -0.2019 | 0.5084 | 0.6838 | |
| V22 | All | PD | IL8_Plasma | -0.2948 | 0.3282 | 0.6838 | |
| NA | NA | NA | NA | NA | NA | NA | NA |
| NA.1 | NA | NA | NA | NA | NA | NA | NA |
## [1] "microtable" "R6"
IL8 and Buccal genus abundance Spearman correlations separated by H. pylori status
IL8 and Buccal genus abundance Spearman correlations independent of H. pylori status
| Type | Taxa | Env | Correlation | Pvalue | AdjPvalue | Significance | |
|---|---|---|---|---|---|---|---|
| V1 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Rodentibacter | IL8_Lavage | 0.1627 | 0.7581 | 0.8919 | |
| V2 | Swab | k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae|g__Leptotrichia | IL8_Lavage | -0.4573 | 0.3618 | 0.5648 | |
| V3 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella | IL8_Lavage | 0.0610 | 0.9086 | 0.9564 | |
| V4 | Swab | k__Bacteria|p__Firmicutes|c__Bacilli|o__Staphylococcales|f__Gemellaceae|g__Gemella | IL8_Lavage | 0.6688 | 0.1463 | 0.3630 | |
| V5 | Swab | k__Bacteria|p__Firmicutes|c__Clostridia|o__Peptostreptococcales-Tissierellales|f__Peptostreptococcaceae|g__[Eubacterium]_yurii_group | IL8_Lavage | -0.6735 | 0.1425 | 0.3630 | |
| V6 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Burkholderiales|f__Neisseriaceae|g__Neisseria | IL8_Lavage | -0.8935 | 0.0164 | 0.3279 | |
| V7 | Swab | k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus | IL8_Lavage | 0.2297 | 0.6615 | 0.8269 | |
| V8 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Actinobacillus | IL8_Lavage | 0.3050 | 0.5567 | 0.7422 | |
| V9 | Swab | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Porphyromonadaceae|g__Porphyromonas | IL8_Lavage | -0.4529 | 0.3671 | 0.5648 | |
| V10 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter | IL8_Lavage | -0.8228 | 0.0443 | 0.3601 | |
| V11 | Swab | k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium | IL8_Lavage | -0.6380 | 0.1729 | 0.3630 | |
| V12 | Swab | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Capnocytophaga | IL8_Lavage | -0.8037 | 0.0540 | 0.3601 | |
| V13 | Swab | k__Bacteria|p__Firmicutes|c__Negativicutes|o__Veillonellales-Selenomonadales|f__Veillonellaceae|g__Veillonella | IL8_Lavage | 0.6527 | 0.1600 | 0.3630 | |
| V14 | Swab | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella | IL8_Lavage | -0.6221 | 0.1872 | 0.3630 | |
| V15 | Swab | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Weeksellaceae|g__Bergeyella | IL8_Lavage | 0.3155 | 0.5425 | 0.7422 | |
| V16 | Swab | k__Bacteria|p__Firmicutes|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Johnsonella | IL8_Lavage | -0.7380 | 0.0940 | 0.3630 | |
| V17 | Swab | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Alloprevotella | IL8_Lavage | 0.6087 | 0.1997 | 0.3630 | |
| V18 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus | IL8_Lavage | 0.0103 | 0.9845 | 0.9845 | |
| V19 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Burkholderiales|f__Neisseriaceae|g__Alysiella | IL8_Lavage | -0.1262 | 0.8117 | 0.9019 | |
| V20 | Swab | k__Bacteria|p__Patescibacteria|c__Gracilibacteria|o__Absconditabacteriales_(SR1)|f_Absconditabacteriales(SR1)|g_Absconditabacteriales(SR1) | IL8_Lavage | -0.7327 | 0.0976 | 0.3630 | |
| V21 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Rodentibacter | IL8_Plasma | -0.5692 | 0.0676 | 0.4508 | |
| V22 | Swab | k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae|g__Leptotrichia | IL8_Plasma | 0.1756 | 0.6056 | 0.9913 | |
| V23 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella | IL8_Plasma | -0.2701 | 0.4217 | 0.9913 | |
| V24 | Swab | k__Bacteria|p__Firmicutes|c__Bacilli|o__Staphylococcales|f__Gemellaceae|g__Gemella | IL8_Plasma | 0.2250 | 0.5060 | 0.9913 | |
| V25 | Swab | k__Bacteria|p__Firmicutes|c__Clostridia|o__Peptostreptococcales-Tissierellales|f__Peptostreptococcaceae|g__[Eubacterium]_yurii_group | IL8_Plasma | -0.0782 | 0.8192 | 0.9913 | |
| V26 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Burkholderiales|f__Neisseriaceae|g__Neisseria | IL8_Plasma | -0.1371 | 0.6876 | 0.9913 | |
| V27 | Swab | k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus | IL8_Plasma | 0.1020 | 0.7655 | 0.9913 | |
| V28 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Actinobacillus | IL8_Plasma | 0.0037 | 0.9913 | 0.9913 | |
| V29 | Swab | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Porphyromonadaceae|g__Porphyromonas | IL8_Plasma | 0.7930 | 0.0036 | 0.0470 |
|
| V30 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter | IL8_Plasma | 0.0576 | 0.8663 | 0.9913 | |
| V31 | Swab | k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium | IL8_Plasma | -0.4703 | 0.1443 | 0.7217 | |
| V32 | Swab | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Capnocytophaga | IL8_Plasma | -0.2702 | 0.4216 | 0.9913 | |
| V33 | Swab | k__Bacteria|p__Firmicutes|c__Negativicutes|o__Veillonellales-Selenomonadales|f__Veillonellaceae|g__Veillonella | IL8_Plasma | 0.0082 | 0.9810 | 0.9913 | |
| V34 | Swab | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella | IL8_Plasma | 0.0301 | 0.9299 | 0.9913 | |
| V35 | Swab | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Weeksellaceae|g__Bergeyella | IL8_Plasma | -0.2564 | 0.4466 | 0.9913 | |
| V36 | Swab | k__Bacteria|p__Firmicutes|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Johnsonella | IL8_Plasma | -0.1082 | 0.7514 | 0.9913 | |
| V37 | Swab | k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Alloprevotella | IL8_Plasma | 0.2109 | 0.5336 | 0.9913 | |
| V38 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus | IL8_Plasma | -0.1120 | 0.7430 | 0.9913 | |
| V39 | Swab | k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Burkholderiales|f__Neisseriaceae|g__Alysiella | IL8_Plasma | 0.7792 | 0.0047 | 0.0470 |
|
| V40 | Swab | k__Bacteria|p__Patescibacteria|c__Gracilibacteria|o__Absconditabacteriales_(SR1)|f_Absconditabacteriales(SR1)|g_Absconditabacteriales(SR1) | IL8_Plasma | 0.0107 | 0.9750 | 0.9913 |
IL8 and Buccal alpha diversity Spearman correlations independent of H. pylori status
| Type | Taxa | Env | Correlation | Pvalue | AdjPvalue | Significance | |
|---|---|---|---|---|---|---|---|
| V1 | All | Observed | IL8_Lavage | -0.8850 | 0.0191 | 0.0429 |
|
| V2 | All | Chao1 | IL8_Lavage | -0.8850 | 0.0191 | 0.0429 |
|
| V4 | All | ACE | IL8_Lavage | -0.8850 | 0.0191 | 0.0429 |
|
| V5 | All | se.ACE | IL8_Lavage | -0.2971 | 0.5675 | 0.5675 | |
| V6 | All | Shannon | IL8_Lavage | -0.6325 | 0.1778 | 0.2667 | |
| V7 | All | Simpson | IL8_Lavage | -0.4599 | 0.3587 | 0.4036 | |
| V8 | All | InvSimpson | IL8_Lavage | -0.4944 | 0.3189 | 0.4036 | |
| V9 | All | Fisher | IL8_Lavage | -0.8907 | 0.0173 | 0.0429 |
|
| V11 | All | PD | IL8_Lavage | -0.7679 | 0.0745 | 0.1342 | |
| V12 | All | Observed | IL8_Plasma | -0.1943 | 0.5671 | 0.9672 | |
| V13 | All | Chao1 | IL8_Plasma | -0.1943 | 0.5671 | 0.9672 | |
| V15 | All | ACE | IL8_Plasma | -0.1943 | 0.5671 | 0.9672 | |
| V16 | All | se.ACE | IL8_Plasma | -0.2044 | 0.5467 | 0.9672 | |
| V17 | All | Shannon | IL8_Plasma | 0.0258 | 0.9401 | 0.9672 | |
| V18 | All | Simpson | IL8_Plasma | 0.0565 | 0.8690 | 0.9672 | |
| V19 | All | InvSimpson | IL8_Plasma | 0.0141 | 0.9672 | 0.9672 | |
| V20 | All | Fisher | IL8_Plasma | -0.1114 | 0.7443 | 0.9672 | |
| V22 | All | PD | IL8_Plasma | -0.0834 | 0.8074 | 0.9672 | |
| NA | NA | NA | NA | NA | NA | NA | NA |
| NA.1 | NA | NA | NA | NA | NA | NA | NA |
## R version 4.0.3 (2020-10-10)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.2 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
##
## locale:
## [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
## [4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
## [7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
## [10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] grid parallel stats4 stats graphics grDevices utils
## [8] datasets methods base
##
## other attached packages:
## [1] ggtree_2.4.2 tidytree_0.3.4
## [3] RColorBrewer_1.1-2 ggpubr_0.4.0
## [5] microeco_0.4.0 magrittr_2.0.1
## [7] kableExtra_1.3.4 tidyMicro_1.47
## [9] forcats_0.5.1 stringr_1.4.0
## [11] dplyr_1.0.7 purrr_0.3.4
## [13] readr_2.0.1 tidyr_1.1.3
## [15] tibble_3.1.3 tidyverse_1.3.0
## [17] qiime2R_0.99.6 microbiome_1.12.0
## [19] ggplot2_3.3.5 ComplexHeatmap_2.6.2
## [21] DESeq2_1.30.1 SummarizedExperiment_1.20.0
## [23] Biobase_2.50.0 MatrixGenerics_1.2.1
## [25] matrixStats_0.60.0 GenomicRanges_1.42.0
## [27] GenomeInfoDb_1.26.7 IRanges_2.24.1
## [29] S4Vectors_0.28.1 BiocGenerics_0.36.1
## [31] phyloseq_1.34.0 questionr_0.7.4
## [33] BiocManager_1.30.16 sjPlot_2.8.9
## [35] readxl_1.3.1 remotes_2.4.0
## [37] devtools_2.4.2 usethis_2.0.1
##
## loaded via a namespace (and not attached):
## [1] estimability_1.3 ragg_1.1.3 bit64_4.0.5
## [4] knitr_1.33 multcomp_1.4-17 DelayedArray_0.16.3
## [7] data.table_1.14.0 rpart_4.1-15 RCurl_1.98-1.4
## [10] generics_0.1.0 callr_3.7.0 TH.data_1.0-10
## [13] RSQLite_2.2.7 VGAM_1.1-5 bit_4.0.4
## [16] tzdb_0.1.2 webshot_0.5.2 xml2_1.3.2
## [19] lubridate_1.7.10 httpuv_1.6.2 assertthat_0.2.1
## [22] xfun_0.25 hms_1.1.0 jquerylib_0.1.4
## [25] evaluate_0.14 promises_1.2.0.1 fansi_0.5.0
## [28] dbplyr_2.1.1 igraph_1.2.6 DBI_1.1.1
## [31] geneplotter_1.68.0 htmlwidgets_1.5.3 ellipsis_0.3.2
## [34] backports_1.2.1 insight_0.14.4 permute_0.9-5
## [37] picante_1.8.2 annotate_1.68.0 vctrs_0.3.8
## [40] Cairo_1.5-12.2 abind_1.4-5 sjlabelled_1.1.8
## [43] cachem_1.0.6 withr_2.4.2 checkmate_2.0.0
## [46] emmeans_1.6.3 treeio_1.14.4 vegan_2.5-7
## [49] prettyunits_1.1.1 svglite_2.0.0 cluster_2.1.0
## [52] lazyeval_0.2.2 ape_5.5 crayon_1.4.1
## [55] genefilter_1.72.1 labeling_0.4.2 pkgconfig_2.0.3
## [58] zCompositions_1.3.4 nlme_3.1-149 pkgload_1.2.1
## [61] nnet_7.3-14 rlang_0.4.11 lifecycle_1.0.0
## [64] miniUI_0.1.1.1 sandwich_3.0-1 modelr_0.1.8
## [67] randomForest_4.6-14 cellranger_1.1.0 rprojroot_2.0.2
## [70] datawizard_0.2.0.1 aplot_0.0.6 Matrix_1.3-4
## [73] carData_3.0-4 Rhdf5lib_1.12.1 boot_1.3-25
## [76] zoo_1.8-9 reprex_2.0.1 base64enc_0.1-3
## [79] GlobalOptions_0.1.2 processx_3.5.2 viridisLite_0.4.0
## [82] png_0.1-7 rjson_0.2.20 parameters_0.14.0
## [85] bitops_1.0-7 rhdf5filters_1.2.1 Biostrings_2.58.0
## [88] blob_1.2.2 GUniFrac_1.3 shape_1.4.6
## [91] rstatix_0.7.0 jpeg_0.1-9 ggsignif_0.6.2
## [94] ggeffects_1.1.1 scales_1.1.1 memoise_2.0.0
## [97] plyr_1.8.6 zlibbioc_1.36.0 compiler_4.0.3
## [100] clue_0.3-59 lme4_1.1-27.1 cli_3.0.1
## [103] ade4_1.7-17 XVector_0.30.0 patchwork_1.1.1
## [106] ps_1.6.0 htmlTable_2.2.1 Formula_1.2-4
## [109] MASS_7.3-53 mgcv_1.8-33 tidyselect_1.1.1
## [112] stringi_1.7.3 textshaping_0.3.5 highr_0.9
## [115] yaml_2.2.1 locfit_1.5-9.4 latticeExtra_0.6-29
## [118] sass_0.4.0 tools_4.0.3 rio_0.5.27
## [121] circlize_0.4.13 rstudioapi_0.13 foreach_1.5.1
## [124] foreign_0.8-80 gridExtra_2.3 farver_2.1.0
## [127] Rtsne_0.15 rvcheck_0.1.8 digest_0.6.27
## [130] shiny_1.6.0 Rcpp_1.0.7 car_3.0-11
## [133] broom_0.7.9 performance_0.7.3 later_1.3.0
## [136] httr_1.4.2 AnnotationDbi_1.52.0 effectsize_0.4.5
## [139] sjstats_0.18.1 colorspace_2.0-2 rvest_1.0.1
## [142] XML_3.99-0.7 fs_1.5.0 truncnorm_1.0-8
## [145] splines_4.0.3 rmutil_1.1.5 statmod_1.4.36
## [148] multtest_2.46.0 renv_0.14.0 systemfonts_1.0.2
## [151] sessioninfo_1.1.1 xtable_1.8-4 jsonlite_1.7.2
## [154] nloptr_1.2.2.2 testthat_3.0.4 R6_2.5.1
## [157] Hmisc_4.5-0 NADA_1.6-1.1 pillar_1.6.2
## [160] htmltools_0.5.1.1 mime_0.11 glue_1.4.2
## [163] fastmap_1.1.0 minqa_1.2.4 DT_0.18
## [166] BiocParallel_1.24.1 codetools_0.2-16 pkgbuild_1.2.0
## [169] mvtnorm_1.1-2 utf8_1.2.2 lattice_0.20-41
## [172] bslib_0.2.5.1 curl_4.3.2 zip_2.2.0
## [175] openxlsx_4.2.4 survival_3.2-7 rmarkdown_2.10
## [178] desc_1.3.0 biomformat_1.18.0 munsell_0.5.0
## [181] GetoptLong_1.0.5 rhdf5_2.34.0 GenomeInfoDbData_1.2.4
## [184] iterators_1.0.13 labelled_2.8.0 sjmisc_2.8.7
## [187] haven_2.4.3 reshape2_1.4.4 gtable_0.3.0
## [190] bayestestR_0.11.0